ENSCSAVG00000002001 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000002001 T35953_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000003369 RRM 46 115

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.929
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.771
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.771
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.771
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.771
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.771
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.771
pabpn1 Danio rerio ENSDARG00000045373 I 0.757
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.743
LOAG_03634 Loa loa LOAG_03634 I 0.743
Bm1_48895 Brugia malayi Bm1_48895 I 0.743
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.729
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.718
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.718
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.718
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.718
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.718
Q9DDY9 Xenopus laevis Q9DDY9 I 0.704
AAG36902 Xenopus laevis AAG36902 I 0.704
PHUM037550 Pediculus humanus PHUM037550 I 0.704
AAH45063 Xenopus laevis AAH45063 I 0.704
AAH73657 Xenopus laevis AAH73657 I 0.704
AAR26262 Xenopus laevis AAR26262 I 0.704
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.704