ENSGACG00000008674 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000008674 T37462_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.766
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.766
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000011453 RRM 22 90
ENSGACP00000011453 RRM 111 180

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MSI1 Takifugu rubripes ENSTRUG00000015636 I 0.810
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.803
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.803
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.803
Msi1 Mus musculus ENSMUSG00000054256 I 0.754
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.754
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.746
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.746
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.746
MSI1 Homo sapiens ENSG00000135097 D 0.746
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.739
MSI1 Canis familiaris ENSCAFG00000010283 I 0.734
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.732
CBU92439 Xenopus laevis CBU92439 I 0.732
AAA49920 Xenopus laevis AAA49920 I 0.732
AAH82667 Xenopus laevis AAH82667 I 0.732
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.732
CBF67566 Xenopus laevis CBF67566 I 0.732
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.725
AAA49919 Xenopus laevis AAA49919 I 0.725
AAH84959 Xenopus laevis AAH84959 I 0.725
msi1 Danio rerio ENSDARG00000010710 I 0.725