AAA49919 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAA49919 T59418_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.957
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.957
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAA49919 RRM 22 91
AAA49919 RRM 111 180

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH84959 Xenopus laevis AAH84959 I 1.000
CBU92439 Xenopus laevis CBU92439 I 0.993
AAA49920 Xenopus laevis AAA49920 I 0.993
CBF67566 Xenopus laevis CBF67566 I 0.993
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.993
AAH82667 Xenopus laevis AAH82667 I 0.993
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.964
MSI1 Homo sapiens ENSG00000135097 D 0.957
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.957
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.957
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.950
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.950
Msi1 Mus musculus ENSMUSG00000054256 I 0.950
MSI1 Canis familiaris ENSCAFG00000010283 I 0.937
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.936
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.929
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.893
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.893
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.893
MSI1 Takifugu rubripes ENSTRUG00000015636 I 0.879
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.871
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.871
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.864
MSI1 Felis catus ENSFCAG00000011007 I 0.864
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.864
MSI1 Echinops telfairi ENSETEG00000004756 I 0.857
MSI1 Pteropus vampyrus ENSPVAG00000002225 I 0.850
LOC100053469 Equus caballus ENSECAG00000017526 I 0.843
msi2b Danio rerio ENSDARG00000032614 I 0.836
MSI2 Microcebus murinus ENSMICG00000013598 I 0.829
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.829
MSI2 Homo sapiens ENSG00000153944 I 0.829
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.829
Msi2 Mus musculus ENSMUSG00000069769 I 0.829
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.829
AAA50004 Xenopus laevis AAA50004 I 0.821
AAI69841 Xenopus laevis AAI69841 I 0.821
MSI2 Canis familiaris ENSCAFG00000017418 I 0.821
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.821
msi2a Danio rerio ENSDARG00000033901 I 0.814
msi1 Danio rerio ENSDARG00000010710 I 0.800
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.793
MSI1 Gorilla gorilla ENSGGOG00000010328 I 0.786
gw1.72.166.1 Daphnia pulex gw1.72.166.1 I 0.779
LOC100390978 Callithrix jacchus ENSCJAG00000013998 I 0.764
MSI2 Pteropus vampyrus ENSPVAG00000017053 I 0.757
GK18043 Drosophila willistoni FBgn0220042 I 0.729
GE22169 Drosophila yakuba FBgn0239397 I 0.729
Rbp6 Drosophila melanogaster FBgn0260943 I 0.729
GM24349 Drosophila sechellia FBgn0179213 I 0.729
GD12423 Drosophila simulans FBgn0184155 I 0.729
GF24401 Drosophila ananassae FBgn0101395 I 0.729
GH15068 Drosophila grimshawi FBgn0122543 I 0.729
GG15829 Drosophila erecta FBgn0108068 I 0.729
GI12835 Drosophila mojavensis FBgn0135592 I 0.729
ENSGACG00000008674 Gasterosteus aculeatus ENSGACG00000008674 I 0.725
MSI1 Ochotona princeps ENSOPRG00000016879 I 0.700
ENSMGAG00000008742 Meleagris gallopavo ENSMGAG00000008742 I 0.700