MSI1 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000015636 T42356_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.900
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.900
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000039977 RRM 24 93
ENSTRUP00000039977 RRM 113 182
ENSTRUP00000039978 RRM 24 93
ENSTRUP00000039978 RRM 113 182

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.957
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.957
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.957
Msi1 Mus musculus ENSMUSG00000054256 I 0.907
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.900
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.900
MSI1 Homo sapiens ENSG00000135097 D 0.900
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.900
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.900
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.893
CBF67566 Xenopus laevis CBF67566 I 0.886
AAH82667 Xenopus laevis AAH82667 I 0.886
CBU92439 Xenopus laevis CBU92439 I 0.886
AAA49920 Xenopus laevis AAA49920 I 0.886
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.886
MSI1 Canis familiaris ENSCAFG00000010283 I 0.880
AAH84959 Xenopus laevis AAH84959 I 0.879
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.879
AAA49919 Xenopus laevis AAA49919 I 0.879
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.871
msi1 Danio rerio ENSDARG00000010710 I 0.864
msi2b Danio rerio ENSDARG00000032614 I 0.836
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.829
Msi2 Mus musculus ENSMUSG00000069769 I 0.829
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.829
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.829
MSI2 Microcebus murinus ENSMICG00000013598 I 0.829
MSI2 Homo sapiens ENSG00000153944 I 0.829
AAI69841 Xenopus laevis AAI69841 I 0.821
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.821
AAA50004 Xenopus laevis AAA50004 I 0.821
MSI2 Canis familiaris ENSCAFG00000017418 I 0.821
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.814
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.814
msi2a Danio rerio ENSDARG00000033901 I 0.814
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.814
ENSGACG00000008674 Gasterosteus aculeatus ENSGACG00000008674 I 0.810
MSI1 Felis catus ENSFCAG00000011007 I 0.807
MSI1 Echinops telfairi ENSETEG00000004756 I 0.800
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.800
MSI1 Pteropus vampyrus ENSPVAG00000002225 I 0.793
LOC100053469 Equus caballus ENSECAG00000017526 I 0.786
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.771
gw1.72.166.1 Daphnia pulex gw1.72.166.1 I 0.764
LOC100390978 Callithrix jacchus ENSCJAG00000013998 I 0.764
MSI2 Pteropus vampyrus ENSPVAG00000017053 I 0.757
Minc01924 Meloidogyne incognita Minc01924 I 0.729
MSI1 Gorilla gorilla ENSGGOG00000010328 I 0.729
GE22169 Drosophila yakuba FBgn0239397 I 0.721
Rbp6 Drosophila melanogaster FBgn0260943 I 0.721
GF24401 Drosophila ananassae FBgn0101395 I 0.721
GG15829 Drosophila erecta FBgn0108068 I 0.721
GH15068 Drosophila grimshawi FBgn0122543 I 0.721
GK18043 Drosophila willistoni FBgn0220042 I 0.721
GI12835 Drosophila mojavensis FBgn0135592 I 0.721
GM24349 Drosophila sechellia FBgn0179213 I 0.721
GD12423 Drosophila simulans FBgn0184155 I 0.721