msi1 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000010710 T36059_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.821
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.821
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000041633 RRM 28 90
ENSDARP00000041633 RRM 110 179
ENSDARP00000088198 RRM 1 40
ENSDARP00000088198 RRM 60 129

Links

Other RRM family RBPs
Other Danio rerio RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MSI1 Gorilla gorilla ENSGGOG00000010328 I 0.912
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.893
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.893
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.893
LOC100070744 Equus caballus ENSECAG00000011435 I 0.875
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.866
MSI1 Takifugu rubripes ENSTRUG00000015636 I 0.864
ENSMGAG00000008742 Meleagris gallopavo ENSMGAG00000008742 I 0.864
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.857
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.857
MSI1 Felis catus ENSFCAG00000011007 I 0.857
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.857
Msi1 Mus musculus ENSMUSG00000054256 I 0.851
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.850
MSI1 Echinops telfairi ENSETEG00000004756 I 0.850
MSI1 Pteropus vampyrus ENSPVAG00000002225 I 0.842
LOC100390978 Callithrix jacchus ENSCJAG00000013998 I 0.835
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.829
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.827
MSI2 Cavia porcellus ENSCPOG00000008752 N 0.827
LOC100053469 Equus caballus ENSECAG00000017526 I 0.827
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.821
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.821
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.821
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.821
MSI1 Homo sapiens ENSG00000135097 D 0.821
MSI2 Pteropus vampyrus ENSPVAG00000017053 I 0.820
MSI2 Tarsius syrichta ENSTSYG00000011839 N 0.809
AAA49920 Xenopus laevis AAA49920 I 0.807
CBU92439 Xenopus laevis CBU92439 I 0.807
CBF67566 Xenopus laevis CBF67566 I 0.807
AAH82667 Xenopus laevis AAH82667 I 0.807
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.807
MSI1 Canis familiaris ENSCAFG00000010283 I 0.803
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.800
AAH84959 Xenopus laevis AAH84959 I 0.800
AAA49919 Xenopus laevis AAA49919 I 0.800
msi2b Danio rerio ENSDARG00000032614 I 0.800
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.793
MSI2 Microcebus murinus ENSMICG00000013598 I 0.793
Msi2 Mus musculus ENSMUSG00000069769 I 0.793
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.793
MSI2 Homo sapiens ENSG00000153944 I 0.793
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.793
AAA50004 Xenopus laevis AAA50004 I 0.786
AAI69841 Xenopus laevis AAI69841 I 0.786
MSI2 Canis familiaris ENSCAFG00000017418 I 0.779
msi2a Danio rerio ENSDARG00000033901 I 0.779
MSI2 Macaca mulatta ENSMMUG00000002069 I 0.743
amel4_ncbi_hmm21060 Apis mellifera amel4_ncbi_hmm21060 N 0.736
AGAP006656 Anopheles gambiae AGAP006656 N 0.729
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.729
ENSGACG00000008674 Gasterosteus aculeatus ENSGACG00000008674 I 0.725
nasonia_NCBI_hmm598804 Nasonia vitripennis nasonia_NCBI_hmm598804 N 0.722
gw1.72.166.1 Daphnia pulex gw1.72.166.1 I 0.707