PUF60 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000022929 T38102_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000017852 RRM 128 198
ENSLAFP00000017852 RRM 225 295
ENSLAFP00000017852 RRM 477 540
ENSLAFP00000021243 RRM 129 199
ENSLAFP00000021243 RRM 226 292
ENSLAFP00000021243 RRM 476 539

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PUF60 Monodelphis domestica ENSMODG00000009161 N 0.971
Puf60 Dipodomys ordii ENSDORG00000004585 N 0.971
PUF60 Taeniopygia guttata ENSTGUG00000012797 N 0.971
Q5F3W7_CHICK Gallus gallus ENSGALG00000014089 N 0.971
PUF60 Meleagris gallopavo ENSMGAG00000013070 N 0.971
PUF60 Anolis carolinensis ENSACAG00000001645 N 0.971
LOC100394446 Callithrix jacchus ENSCJAG00000021485 N 0.966
PUF60_BOVIN Bos taurus ENSBTAG00000037493 N 0.966
Puf60 Rattus norvegicus ENSRNOG00000009960 N 0.966
PUF60 Canis familiaris ENSCAFG00000001400 N 0.966
LOC100065550 Equus caballus ENSECAG00000024681 N 0.966
PUF60 Macaca mulatta ENSMMUG00000013558 N 0.966
PUF60 Gorilla gorilla ENSGGOG00000004646 N 0.966
Puf60 Mus musculus ENSMUSG00000002524 N 0.966
PUF60 Homo sapiens ENSG00000179950 N 0.966
Ame_R010349 Ailuropoda melanoleuca Ame_R010349 N 0.966
PUF60 Felis catus ENSFCAG00000001045 N 0.966
PUF60 Tursiops truncatus ENSTTRG00000017088 N 0.961
PUF60 Pan troglodytes ENSPTRG00000020670 N 0.961
puf60 Xenopus tropicalis ENSXETG00000012469 N 0.951
ENSMLUG00000013032 Myotis lucifugus ENSMLUG00000013032 N 0.927
puf60a Danio rerio ENSDARG00000032175 N 0.913
puf60b Danio rerio ENSDARG00000001241 N 0.898
PUF60 Ochotona princeps ENSOPRG00000002147 N 0.898
PUF60 Takifugu rubripes ENSTRUG00000005420 N 0.888
PUF60 Oryzias latipes ENSORLG00000012279 N 0.888
PUF60 Tetraodon nigroviridis ENSTNIG00000013675 N 0.888
PUF60 Ornithorhynchus anatinus ENSOANG00000006962 N 0.871
PUF60 Tarsius syrichta ENSTSYG00000011912 N 0.859
PUF60 Takifugu rubripes ENSTRUG00000008843 N 0.850
PUF60 Cavia porcellus ENSCPOG00000014613 N 0.840
PUF60 Tetraodon nigroviridis ENSTNIG00000003069 N 0.813
PUF60 Gasterosteus aculeatus ENSGACG00000001484 N 0.785
PUF60 Microcebus murinus ENSMICG00000012226 N 0.772
fgenesh2_pm.scaffold_205000003 Branchiostoma floridae fgenesh2_pm.scaffold_205000003 N 0.767
XP_001191956.1 Strongylocentrotus purpuratus XP_001191956.1 N 0.738
XP_785572.1 Strongylocentrotus purpuratus XP_785572.1 N 0.738
ISCW004373 Ixodes scapularis ISCW004373 N 0.720