puf60 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000012469 T42882_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000027265 RRM 88 158
ENSXETP00000027265 RRM 185 255
ENSXETP00000027265 RRM 442 505
ENSXETP00000027266 RRM 71 141
ENSXETP00000027266 RRM 168 238
ENSXETP00000027266 RRM 429 492

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Puf60 Dipodomys ordii ENSDORG00000004585 N 0.976
PUF60 Meleagris gallopavo ENSMGAG00000013070 N 0.976
PUF60 Monodelphis domestica ENSMODG00000009161 N 0.976
PUF60 Taeniopygia guttata ENSTGUG00000012797 N 0.976
PUF60 Anolis carolinensis ENSACAG00000001645 N 0.976
Q5F3W7_CHICK Gallus gallus ENSGALG00000014089 N 0.976
PUF60 Homo sapiens ENSG00000179950 N 0.971
PUF60 Felis catus ENSFCAG00000001045 N 0.971
Ame_R010349 Ailuropoda melanoleuca Ame_R010349 N 0.971
PUF60 Macaca mulatta ENSMMUG00000013558 N 0.971
Puf60 Rattus norvegicus ENSRNOG00000009960 N 0.971
Puf60 Mus musculus ENSMUSG00000002524 N 0.971
LOC100065550 Equus caballus ENSECAG00000024681 N 0.971
PUF60 Gorilla gorilla ENSGGOG00000004646 N 0.971
PUF60 Canis familiaris ENSCAFG00000001400 N 0.971
PUF60_BOVIN Bos taurus ENSBTAG00000037493 N 0.971
LOC100394446 Callithrix jacchus ENSCJAG00000021485 N 0.971
PUF60 Tursiops truncatus ENSTTRG00000017088 N 0.966
PUF60 Pan troglodytes ENSPTRG00000020670 N 0.966
PUF60 Loxodonta africana ENSLAFG00000022929 N 0.951
ENSMLUG00000013032 Myotis lucifugus ENSMLUG00000013032 N 0.942
puf60a Danio rerio ENSDARG00000032175 N 0.922
puf60b Danio rerio ENSDARG00000001241 N 0.917
PUF60 Oryzias latipes ENSORLG00000012279 N 0.908
PUF60 Tetraodon nigroviridis ENSTNIG00000013675 N 0.908
PUF60 Takifugu rubripes ENSTRUG00000005420 N 0.908
PUF60 Ochotona princeps ENSOPRG00000002147 N 0.903
PUF60 Takifugu rubripes ENSTRUG00000008843 N 0.864
PUF60 Tarsius syrichta ENSTSYG00000011912 N 0.864
PUF60 Cavia porcellus ENSCPOG00000014613 N 0.845
PUF60 Tetraodon nigroviridis ENSTNIG00000003069 N 0.837
PUF60 Ornithorhynchus anatinus ENSOANG00000006962 N 0.835
fgenesh2_pm.scaffold_205000003 Branchiostoma floridae fgenesh2_pm.scaffold_205000003 N 0.791
PUF60 Gasterosteus aculeatus ENSGACG00000001484 N 0.785
PUF60 Microcebus murinus ENSMICG00000012226 N 0.777
XP_001191956.1 Strongylocentrotus purpuratus XP_001191956.1 N 0.757
XP_785572.1 Strongylocentrotus purpuratus XP_785572.1 N 0.757
ISCW004373 Ixodes scapularis ISCW004373 N 0.729
e_gw1.9.204.1 Lottia gigantea e_gw1.9.204.1 N 0.702