PUF60 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000008843 T42275_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000022216 RRM 102 172
ENSTRUP00000022216 RRM 199 269
ENSTRUP00000022216 RRM 435 498
ENSTRUP00000022217 RRM 84 154
ENSTRUP00000022217 RRM 181 251
ENSTRUP00000022217 RRM 417 480

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PUF60 Tetraodon nigroviridis ENSTNIG00000003069 N 0.923
puf60a Danio rerio ENSDARG00000032175 N 0.908
Puf60 Rattus norvegicus ENSRNOG00000009960 N 0.879
Puf60 Mus musculus ENSMUSG00000002524 N 0.879
Q5F3W7_CHICK Gallus gallus ENSGALG00000014089 N 0.874
PUF60 Homo sapiens ENSG00000179950 N 0.874
PUF60 Tetraodon nigroviridis ENSTNIG00000013675 N 0.874
PUF60 Takifugu rubripes ENSTRUG00000005420 N 0.874
PUF60 Gorilla gorilla ENSGGOG00000004646 N 0.874
PUF60 Meleagris gallopavo ENSMGAG00000013070 N 0.874
PUF60 Oryzias latipes ENSORLG00000012279 N 0.874
LOC100065550 Equus caballus ENSECAG00000024681 N 0.874
PUF60 Monodelphis domestica ENSMODG00000009161 N 0.874
PUF60 Macaca mulatta ENSMMUG00000013558 N 0.874
PUF60 Taeniopygia guttata ENSTGUG00000012797 N 0.874
PUF60 Felis catus ENSFCAG00000001045 N 0.874
PUF60_BOVIN Bos taurus ENSBTAG00000037493 N 0.874
PUF60 Anolis carolinensis ENSACAG00000001645 N 0.874
Puf60 Dipodomys ordii ENSDORG00000004585 N 0.874
Ame_R010349 Ailuropoda melanoleuca Ame_R010349 N 0.874
PUF60 Canis familiaris ENSCAFG00000001400 N 0.874
LOC100394446 Callithrix jacchus ENSCJAG00000021485 N 0.874
puf60b Danio rerio ENSDARG00000001241 N 0.874
PUF60 Pan troglodytes ENSPTRG00000020670 N 0.869
PUF60 Tursiops truncatus ENSTTRG00000017088 N 0.869
puf60 Xenopus tropicalis ENSXETG00000012469 N 0.864
PUF60 Gasterosteus aculeatus ENSGACG00000001484 N 0.852
PUF60 Loxodonta africana ENSLAFG00000022929 N 0.850
ENSMLUG00000013032 Myotis lucifugus ENSMLUG00000013032 N 0.835
PUF60 Ochotona princeps ENSOPRG00000002147 N 0.806
fgenesh2_pm.scaffold_205000003 Branchiostoma floridae fgenesh2_pm.scaffold_205000003 N 0.791
PUF60 Tarsius syrichta ENSTSYG00000011912 N 0.777
PUF60 Cavia porcellus ENSCPOG00000014613 N 0.762
PUF60 Ornithorhynchus anatinus ENSOANG00000006962 N 0.748
XP_785572.1 Strongylocentrotus purpuratus XP_785572.1 N 0.738
XP_001191956.1 Strongylocentrotus purpuratus XP_001191956.1 N 0.738
ISCW004373 Ixodes scapularis ISCW004373 N 0.710