PUF60 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000003069 T42018_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000005641 RRM 94 164
ENSTNIP00000005641 RRM 191 261
ENSTNIP00000005641 RRM 421 487

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PUF60 Takifugu rubripes ENSTRUG00000008843 N 0.923
PUF60 Gasterosteus aculeatus ENSGACG00000001484 N 0.861
puf60a Danio rerio ENSDARG00000032175 N 0.861
Puf60 Mus musculus ENSMUSG00000002524 N 0.842
Puf60 Rattus norvegicus ENSRNOG00000009960 N 0.842
LOC100065550 Equus caballus ENSECAG00000024681 N 0.837
PUF60 Homo sapiens ENSG00000179950 N 0.837
Q5F3W7_CHICK Gallus gallus ENSGALG00000014089 N 0.837
PUF60 Felis catus ENSFCAG00000001045 N 0.837
PUF60 Macaca mulatta ENSMMUG00000013558 N 0.837
PUF60 Taeniopygia guttata ENSTGUG00000012797 N 0.837
PUF60 Monodelphis domestica ENSMODG00000009161 N 0.837
PUF60 Meleagris gallopavo ENSMGAG00000013070 N 0.837
PUF60 Gorilla gorilla ENSGGOG00000004646 N 0.837
Puf60 Dipodomys ordii ENSDORG00000004585 N 0.837
PUF60_BOVIN Bos taurus ENSBTAG00000037493 N 0.837
PUF60 Anolis carolinensis ENSACAG00000001645 N 0.837
puf60 Xenopus tropicalis ENSXETG00000012469 N 0.837
PUF60 Canis familiaris ENSCAFG00000001400 N 0.837
Ame_R010349 Ailuropoda melanoleuca Ame_R010349 N 0.837
LOC100394446 Callithrix jacchus ENSCJAG00000021485 N 0.837
PUF60 Pan troglodytes ENSPTRG00000020670 N 0.833
PUF60 Oryzias latipes ENSORLG00000012279 N 0.833
PUF60 Tursiops truncatus ENSTTRG00000017088 N 0.833
puf60b Danio rerio ENSDARG00000001241 N 0.833
PUF60 Tetraodon nigroviridis ENSTNIG00000013675 N 0.833
PUF60 Takifugu rubripes ENSTRUG00000005420 N 0.833
PUF60 Loxodonta africana ENSLAFG00000022929 N 0.813
ENSMLUG00000013032 Myotis lucifugus ENSMLUG00000013032 N 0.799
PUF60 Ochotona princeps ENSOPRG00000002147 N 0.775
PUF60 Tarsius syrichta ENSTSYG00000011912 N 0.746
fgenesh2_pm.scaffold_205000003 Branchiostoma floridae fgenesh2_pm.scaffold_205000003 N 0.746
PUF60 Cavia porcellus ENSCPOG00000014613 N 0.732
XP_785572.1 Strongylocentrotus purpuratus XP_785572.1 N 0.718
XP_001191956.1 Strongylocentrotus purpuratus XP_001191956.1 N 0.718
PUF60 Ornithorhynchus anatinus ENSOANG00000006962 N 0.713