PUF60 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000012279 T40197_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000015364 RRM 88 158
ENSORLP00000015364 RRM 185 255
ENSORLP00000015364 RRM 434 497
ENSORLP00000015365 RRM 101 171
ENSORLP00000015365 RRM 198 268
ENSORLP00000015365 RRM 447 510
ENSORLP00000015367 RRM 84 154
ENSORLP00000015367 RRM 181 251
ENSORLP00000015367 RRM 430 493

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PUF60 Takifugu rubripes ENSTRUG00000005420 N 0.995
PUF60 Tetraodon nigroviridis ENSTNIG00000013675 N 0.995
puf60a Danio rerio ENSDARG00000032175 N 0.927
Puf60 Mus musculus ENSMUSG00000002524 N 0.917
Puf60 Rattus norvegicus ENSRNOG00000009960 N 0.917
LOC100065550 Equus caballus ENSECAG00000024681 N 0.913
Puf60 Dipodomys ordii ENSDORG00000004585 N 0.913
PUF60 Felis catus ENSFCAG00000001045 N 0.913
PUF60 Canis familiaris ENSCAFG00000001400 N 0.913
PUF60 Gorilla gorilla ENSGGOG00000004646 N 0.913
PUF60 Macaca mulatta ENSMMUG00000013558 N 0.913
PUF60 Monodelphis domestica ENSMODG00000009161 N 0.913
PUF60 Meleagris gallopavo ENSMGAG00000013070 N 0.913
PUF60_BOVIN Bos taurus ENSBTAG00000037493 N 0.913
Q5F3W7_CHICK Gallus gallus ENSGALG00000014089 N 0.913
PUF60 Homo sapiens ENSG00000179950 N 0.913
LOC100394446 Callithrix jacchus ENSCJAG00000021485 N 0.913
PUF60 Anolis carolinensis ENSACAG00000001645 N 0.913
Ame_R010349 Ailuropoda melanoleuca Ame_R010349 N 0.913
PUF60 Taeniopygia guttata ENSTGUG00000012797 N 0.913
puf60 Xenopus tropicalis ENSXETG00000012469 N 0.908
PUF60 Pan troglodytes ENSPTRG00000020670 N 0.908
PUF60 Tursiops truncatus ENSTTRG00000017088 N 0.908
puf60b Danio rerio ENSDARG00000001241 N 0.908
PUF60 Loxodonta africana ENSLAFG00000022929 N 0.888
ENSMLUG00000013032 Myotis lucifugus ENSMLUG00000013032 N 0.883
PUF60 Takifugu rubripes ENSTRUG00000008843 N 0.874
PUF60 Ochotona princeps ENSOPRG00000002147 N 0.845
PUF60 Tetraodon nigroviridis ENSTNIG00000003069 N 0.833
PUF60 Gasterosteus aculeatus ENSGACG00000001484 N 0.818
PUF60 Tarsius syrichta ENSTSYG00000011912 N 0.811
PUF60 Cavia porcellus ENSCPOG00000014613 N 0.786
PUF60 Ornithorhynchus anatinus ENSOANG00000006962 N 0.786
fgenesh2_pm.scaffold_205000003 Branchiostoma floridae fgenesh2_pm.scaffold_205000003 N 0.777
XP_785572.1 Strongylocentrotus purpuratus XP_785572.1 N 0.752
XP_001191956.1 Strongylocentrotus purpuratus XP_001191956.1 N 0.752
PUF60 Microcebus murinus ENSMICG00000012226 N 0.718
ISCW004373 Ixodes scapularis ISCW004373 N 0.705