CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMODG00000003473
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000003473
T39064_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000004247
RRM
72
142
AFITNIPFDVKWQSLKDLIKEKVGKVTYVELLMDAEGKSKGCAVVEFKMEESMKKAAEVLNKHSLSGRPLK
ENSMODP00000004247
RRM
165
233
TVANLDYKVGWKKLKEVFCMAGVVVRADILEHKDGKSHGMGTVTFEQSIEAVQVILMFNGQLLFDRPMH
ENSMODP00000004247
RRM
589
608
IFVRNLPFDFTWKMLKDKFN
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.892
HNRNPM
Tarsius syrichta
ENSTSYG00000011487
N
0.822
Myef2
Mus musculus
ENSMUSG00000027201
N
0.736
MYEF2
Pteropus vampyrus
ENSPVAG00000004102
N
0.736
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.720
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.719
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.718
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.714
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.714
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.714
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.714
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.714
HNRNPM
Homo sapiens
ENSG00000099783
N
0.714
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.714
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.714
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.714
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.714
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.714
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.714
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.714
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.714
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.714
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.714
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.714
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.714
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.714
HNRNPM
Spermophilus tridecemlineatus
ENSSTOG00000008112
N
0.714
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.710
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.706
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.703
HNRNPM
Taeniopygia guttata
ENSTGUG00000000938
N
0.703
MYEF2
Ornithorhynchus anatinus
ENSOANG00000007375
N
0.701
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.700