CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Myef2
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000005258
T41038_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000007097
RRM
93
163
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLN
ENSRNOP00000007097
RRM
226
295
IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMH
ENSRNOP00000007097
RRM
492
560
IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIMNGIKISGREID
ENSRNOP00000007103
RRM
93
163
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLN
ENSRNOP00000007103
RRM
226
295
IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMH
ENSRNOP00000007103
RRM
516
584
IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIMNGIKISGREID
ENSRNOP00000051461
RRM
93
163
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLN
ENSRNOP00000051461
RRM
226
295
IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMH
ENSRNOP00000051461
RRM
459
487
IFVRNLPFDLTWQKLKEKFSQCGKCTSNY
ENSRNOP00000052907
RRM
93
163
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLN
ENSRNOP00000052907
RRM
226
295
IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMH
ENSRNOP00000052907
RRM
499
567
IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIMNGIKISGREID
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
80 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.995
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.995
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.995
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.995
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.995
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.995
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.995
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.995
Myef2
Mus musculus
ENSMUSG00000027201
N
0.995
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.995
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.995
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.995
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.995
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.995
MYEF2
Homo sapiens
ENSG00000104177
N
0.995
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.990
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.990
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.990
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.990
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.990
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.986
MYEF2
Pteropus vampyrus
ENSPVAG00000004102
N
0.959
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.948
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.948
MYEF2
Tarsius syrichta
ENSTSYG00000010575
N
0.929
MYEF2
Ornithorhynchus anatinus
ENSOANG00000007375
N
0.924
Gm9833
Mus musculus
ENSMUSG00000049230
N
0.911
MYEF2
Monodelphis domestica
ENSMODG00000002744
N
0.910
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.905
AAI08588
Xenopus laevis
AAI08588
N
0.900
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.891
MYEF2
Otolemur garnettii
ENSOGAG00000010907
N
0.890
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.883
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.881
MYEF2
Oryzias latipes
ENSORLG00000002730
N
0.881
MYEF2
Sorex araneus
ENSSARG00000003264
N
0.876
MYEF2
Ochotona princeps
ENSOPRG00000003919
N
0.871
myef2
Danio rerio
ENSDARG00000059398
N
0.862
MYEF2
Spermophilus tridecemlineatus
ENSSTOG00000007740
N
0.781
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.777
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.777
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.777
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.777
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.777
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.777
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.777
HNRNPM
Homo sapiens
ENSG00000099783
N
0.777
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.777
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.777
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.777
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.777
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.777
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.777
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.777
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.777
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.777
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.777
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.777
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.773
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.773
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.773
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.769
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.768
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.763
HNRNPM
Meleagris gallopavo
ENSMGAG00000000700
N
0.759
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.758
MYEF2
Myotis lucifugus
ENSMLUG00000006781
N
0.757
HNRNPM
Sorex araneus
ENSSARG00000000267
N
0.745
HNRNPM
Gasterosteus aculeatus
ENSGACG00000010265
N
0.738
AAI34826
Xenopus laevis
AAI34826
N
0.735
HNRNPM
Spermophilus tridecemlineatus
ENSSTOG00000008112
N
0.729
HNRNPM
Oryzias latipes
ENSORLG00000005400
N
0.729
HNRNPM
Ochotona princeps
ENSOPRG00000001943
N
0.726
HNRNPM
Takifugu rubripes
ENSTRUG00000013783
N
0.714
HNRNPM
Macropus eugenii
ENSMEUG00000004789
N
0.712
HNRNPM
Dasypus novemcinctus
ENSDNOG00000012157
N
0.712
HNRNPM
Tetraodon nigroviridis
ENSTNIG00000015530
N
0.710
ENSMODG00000003473
Monodelphis domestica
ENSMODG00000003473
N
0.706
HNRNPM
Otolemur garnettii
ENSOGAG00000003234
N
0.701