CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPM
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000010802
T35578_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000020043
RRM
5
39
LSPKGCAVVEFKMEESMKKAAEVLNKHSLSGRPLK
ENSCJAP00000020043
RRM
102
171
VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH
ENSCJAP00000020043
RRM
536
604
IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLNGREID
ENSCJAP00000020089
RRM
73
143
AFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRVSVVVEFKMEESMKKAAEVLNKHSLSGRPLK
ENSCJAP00000020089
RRM
206
275
VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH
ENSCJAP00000020089
RRM
655
723
IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLNGREID
ENSCJAP00000020100
RRM
73
143
AFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLK
ENSCJAP00000020100
RRM
206
275
VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH
ENSCJAP00000020100
RRM
655
723
IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLNGREID
ENSCJAP00000020107
RRM
73
143
AFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRVSVVVEFKMEESMKKAAEVLNKHSLSGRPLK
ENSCJAP00000020107
RRM
167
236
VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH
ENSCJAP00000020107
RRM
616
684
IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLNGREID
ENSCJAP00000046566
RRM
72
142
AFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRVSVVVEFKMEESMKKAAEVLNKHSLSGRPLK
ENSCJAP00000046566
RRM
205
274
VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH
ENSCJAP00000046566
RRM
654
722
IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLNGREID
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.995
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.995
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.995
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.995
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.995
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.995
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.995
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.995
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.995
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.995
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.995
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.995
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.995
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.995
HNRNPM
Homo sapiens
ENSG00000099783
N
0.995
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.995
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.995
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.990
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.990
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.990
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.986
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.976
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.976
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.971
HNRNPM
Sorex araneus
ENSSARG00000000267
N
0.962
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.957
HNRNPM
Meleagris gallopavo
ENSMGAG00000000700
N
0.943
HNRNPM
Ochotona princeps
ENSOPRG00000001943
N
0.943
HNRNPM
Dasypus novemcinctus
ENSDNOG00000012157
N
0.924
HNRNPM
Spermophilus tridecemlineatus
ENSSTOG00000008112
N
0.924
HNRNPM
Macropus eugenii
ENSMEUG00000004789
N
0.915
HNRNPM
Felis catus
ENSFCAG00000015218
N
0.891
HNRNPM
Otolemur garnettii
ENSOGAG00000003234
N
0.884
AAI34826
Xenopus laevis
AAI34826
N
0.862
ENSRNOG00000024645
Rattus norvegicus
ENSRNOG00000024645
N
0.852
HNRNPM
Gasterosteus aculeatus
ENSGACG00000010265
N
0.820
HNRNPM
Oryzias latipes
ENSORLG00000005400
N
0.810
hnrnpm
Xenopus tropicalis
ENSXETG00000001777
N
0.805
HNRNPM
Takifugu rubripes
ENSTRUG00000013783
N
0.791
ENSBTAG00000039263
Bos taurus
ENSBTAG00000039263
N
0.787
HNRNPM
Tetraodon nigroviridis
ENSTNIG00000015530
N
0.782
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.773
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.773
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.768
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.768
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.768
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.768
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.768
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.768
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.768
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.768
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.768
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.768
Myef2
Mus musculus
ENSMUSG00000027201
N
0.768
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.768
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.768
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.768
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.768
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.768
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.768
MYEF2
Homo sapiens
ENSG00000104177
N
0.768
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.763
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.763
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.754
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.749
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.741
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.739
AAI08588
Xenopus laevis
AAI08588
N
0.739
myef2
Danio rerio
ENSDARG00000059398
N
0.735
MYEF2
Oryzias latipes
ENSORLG00000002730
N
0.730
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.724
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.722
ENSMODG00000003473
Monodelphis domestica
ENSMODG00000003473
N
0.714
MYEF2
Monodelphis domestica
ENSMODG00000002744
N
0.711
MYEF2
Otolemur garnettii
ENSOGAG00000010907
N
0.706
MYEF2
Tarsius syrichta
ENSTSYG00000010575
N
0.706