CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF4
(
Tupaia belangeri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTBEG00000010647
T41766_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.729
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTBEP00000009213
RRM
87
155
LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGAS
ENSTBEP00000009213
RRM
357
406
FIYHLPQEFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Tupaia belangeri
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100386457
Callithrix jacchus
ENSCJAG00000021135
I
0.992
CELF4
Oryctolagus cuniculus
ENSOCUG00000024790
I
0.992
Celf4
Mus musculus
ENSMUSG00000024268
I
0.983
CELF4
Monodelphis domestica
ENSMODG00000000306
N
0.958
CELF4
Sus scrofa
ENSSSCG00000003748
N
0.950
CELF6
Takifugu rubripes
ENSTRUG00000012391
I
0.899
ENSCAFG00000017759
Canis familiaris
ENSCAFG00000017759
N
0.874
Brunol4
Rattus norvegicus
ENSRNOG00000014503
I
0.817
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.702