XM_002874153.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.C_scaffold_6001957 T44474_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_6001957 RRM 132 199
fgenesh1_pm.C_scaffold_6001957 RRM 229 297

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CID13 Arabidopsis thaliana AT5G24440-TAIR-G N 0.956
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.752
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.752
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.752
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.752
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.745
29485.m000140 Ricinus communis 29485.m000140 N 0.745
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.745
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.745
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.737
30068.m002593 Ricinus communis 30068.m002593 N 0.737
ppa006808m Prunus persica ppa006808m N 0.737
PK12463.1 Cannabis sativa PK12463.1 N 0.730
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.730
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.730
MDP0000233630 Malus x domestica MDP0000233630 N 0.730
PK04894.1 Cannabis sativa PK04894.1 N 0.723
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.723
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.723
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.723
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.715
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.715
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.715
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.715
SB07G001560 Sorghum bicolor Sb07g001560 N 0.715
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.715
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.708
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.708
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.708
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.708
mgf013366m Mimulus guttatus mgf013366m N 0.708
ppa009298m Prunus persica ppa009298m N 0.708
mgf012896m Mimulus guttatus mgf012896m N 0.708
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.701
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.701
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.701
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.701
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.701