cassava38065.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava38065.valid.m1 T49366_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava38065.valid.m1 RRM 74 141
cassava38065.valid.m1 RRM 171 239

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 1.000
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 1.000
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.993
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.993
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.993
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.993
29485.m000140 Ricinus communis 29485.m000140 N 0.985
30068.m002593 Ricinus communis 30068.m002593 N 0.891
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.883
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.876
MDP0000233630 Malus x domestica MDP0000233630 N 0.876
PK04894.1 Cannabis sativa PK04894.1 N 0.869
ppa006808m Prunus persica ppa006808m N 0.869
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.869
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.869
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.869
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.869
PK12463.1 Cannabis sativa PK12463.1 N 0.869
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.861
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.854
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.854
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.854
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.854
SB07G001560 Sorghum bicolor Sb07g001560 N 0.854
mgf013366m Mimulus guttatus mgf013366m N 0.854
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.854
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.847
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.847
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.847
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.847
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.839
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.839
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.839
mgf012896m Mimulus guttatus mgf012896m N 0.839
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.832
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.832
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.825
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.818
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.803
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.803
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.803
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.796
ppa009298m Prunus persica ppa009298m N 0.796
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.788
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.788
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.788
29650.m000268 Ricinus communis 29650.m000268 N 0.788
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.781
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.781
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.781
PK28889.1 Cannabis sativa PK28889.1 N 0.781
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.774
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.766
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.766
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.766
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.766
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.759
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.759
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.759
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.752
SB03G002180 Sorghum bicolor Sb03g002180 N 0.752
SB10G021290 Sorghum bicolor Sb10g021290 N 0.752
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.752
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.752
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.752
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.752
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.745
XM_002874153.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001957 N 0.745
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.745
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.745
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.737
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.737
CID13 Arabidopsis thaliana AT5G24440-TAIR-G N 0.730
mgf014445m Mimulus guttatus mgf014445m N 0.730
mgf005336m Mimulus guttatus mgf005336m N 0.723
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.715
LjT41H24.20.nd Lotus japonicus LjT41H24.20.nd N 0.708
chr3.LjT02L14.110.nd Lotus japonicus chr3.LjT02L14.110.nd N 0.701
MDP0000223003 Malus x domestica MDP0000223003 N 0.701