Medtr3g122880 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr3g122880 T54484_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr3g122880.1 RRM 201 268
Medtr3g122880.1 RRM 298 366

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.956
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.956
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.949
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.934
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.912
PK04894.1 Cannabis sativa PK04894.1 N 0.912
ppa006808m Prunus persica ppa006808m N 0.912
MDP0000233630 Malus x domestica MDP0000233630 N 0.898
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.876
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.876
30068.m002593 Ricinus communis 30068.m002593 N 0.869
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.869
29485.m000140 Ricinus communis 29485.m000140 N 0.861
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.861
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.861
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.861
SB07G001560 Sorghum bicolor Sb07g001560 N 0.861
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.861
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.861
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.861
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.861
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.861
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.861
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.854
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.854
PK12463.1 Cannabis sativa PK12463.1 N 0.854
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.854
mgf012896m Mimulus guttatus mgf012896m N 0.854
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.854
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.854
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.854
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.839
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.839
mgf013366m Mimulus guttatus mgf013366m N 0.839
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.832
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.832
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.832
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.832
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.803
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.803
ppa009298m Prunus persica ppa009298m N 0.796
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.788
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.788
LjT41H24.20.nd Lotus japonicus LjT41H24.20.nd N 0.788
chr3.LjT02L14.110.nd Lotus japonicus chr3.LjT02L14.110.nd N 0.781
29650.m000268 Ricinus communis 29650.m000268 N 0.781
PK28889.1 Cannabis sativa PK28889.1 N 0.774
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.774
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.774
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.774
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.766
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.766
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.766
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.759
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.759
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.759
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.752
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.752
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.752
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.752
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.745
mgf005336m Mimulus guttatus mgf005336m N 0.737
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.737
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.737
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.737
mgf014445m Mimulus guttatus mgf014445m N 0.730
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.730
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.723
MDP0000223003 Malus x domestica MDP0000223003 N 0.723
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.723
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.715
CID13 Arabidopsis thaliana AT5G24440-TAIR-G N 0.715
SB10G021290 Sorghum bicolor Sb10g021290 N 0.708
XM_002874153.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001957 N 0.708
B9GIT2_POPTR Populus trichocarpa POPTR_0001s45290 N 0.701
SB03G002180 Sorghum bicolor Sb03g002180 N 0.701
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.701
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.701