30068.m002593 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 30068.m002593 T48743_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
30068.m002593 RRM 196 263
30068.m002593 RRM 293 361

Links

Other RRM family RBPs
Other Ricinus communis RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.971
PK12463.1 Cannabis sativa PK12463.1 N 0.942
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.927
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.920
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.920
SB07G001560 Sorghum bicolor Sb07g001560 N 0.912
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.912
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.912
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.912
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.905
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.905
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.898
29485.m000140 Ricinus communis 29485.m000140 N 0.898
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.898
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.891
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.891
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.891
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.891
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.891
MDP0000233630 Malus x domestica MDP0000233630 N 0.891
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.891
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.891
PK04894.1 Cannabis sativa PK04894.1 N 0.891
ppa006808m Prunus persica ppa006808m N 0.891
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.891
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.891
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.883
mgf013366m Mimulus guttatus mgf013366m N 0.883
mgf012896m Mimulus guttatus mgf012896m N 0.883
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.883
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.876
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.869
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.869
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.869
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.861
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.861
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.854
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.832
ppa009298m Prunus persica ppa009298m N 0.818
PK28889.1 Cannabis sativa PK28889.1 N 0.810
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.810
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.810
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.810
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.803
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.803
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.796
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.796
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.796
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.788
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.788
29650.m000268 Ricinus communis 29650.m000268 N 0.788
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.781
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.781
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.774
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.774
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.774
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.774
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.774
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.774
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.766
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.766
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.766
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.766
SB03G002180 Sorghum bicolor Sb03g002180 N 0.759
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.759
SB10G021290 Sorghum bicolor Sb10g021290 N 0.752
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.752
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.752
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.752
mgf014445m Mimulus guttatus mgf014445m N 0.745
B9GIT2_POPTR Populus trichocarpa POPTR_0001s45290 N 0.745
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.737
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.737
XM_002874153.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001957 N 0.737
CID13 Arabidopsis thaliana AT5G24440-TAIR-G N 0.723
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.723
mgf005336m Mimulus guttatus mgf005336m N 0.715
MDP0000223003 Malus x domestica MDP0000223003 N 0.715
Cucsa.071470 Cucumis sativus Cucsa.071470 N 0.710
LjT41H24.20.nd Lotus japonicus LjT41H24.20.nd N 0.708
chr3.LjT02L14.110.nd Lotus japonicus chr3.LjT02L14.110.nd N 0.701