XM_002877626.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.5__1290__AT3G49390.2 T44546_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__1290__AT3G49390.2 RRM 169 236
fgenesh2_kg.5__1290__AT3G49390.2 RRM 266 333

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.993
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.825
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.810
SB07G001560 Sorghum bicolor Sb07g001560 N 0.810
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.810
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.810
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.810
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.810
PK04894.1 Cannabis sativa PK04894.1 N 0.810
29485.m000140 Ricinus communis 29485.m000140 N 0.810
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.803
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.803
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.803
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.803
mgf012896m Mimulus guttatus mgf012896m N 0.803
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.803
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.803
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.796
PK12463.1 Cannabis sativa PK12463.1 N 0.796
ppa006808m Prunus persica ppa006808m N 0.796
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.796
30068.m002593 Ricinus communis 30068.m002593 N 0.796
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.796
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.788
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.788
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.788
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.788
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.788
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.788
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.788
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.788
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.781
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.781
MDP0000233630 Malus x domestica MDP0000233630 N 0.781
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.781
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.781
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.781
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.781
mgf013366m Mimulus guttatus mgf013366m N 0.774
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.766
29650.m000268 Ricinus communis 29650.m000268 N 0.745
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.737
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.730
ppa009298m Prunus persica ppa009298m N 0.730
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.730
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.730
SB10G021290 Sorghum bicolor Sb10g021290 N 0.730
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.730
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.723
PK28889.1 Cannabis sativa PK28889.1 N 0.723
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.723
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.723
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.715
mgf005336m Mimulus guttatus mgf005336m N 0.715
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.715
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.715
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.715
XM_002874153.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001957 N 0.708
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.708
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.708
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.708
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.708
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.701
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.701
SB03G002180 Sorghum bicolor Sb03g002180 N 0.701
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.701
CID13 Arabidopsis thaliana AT5G24440-TAIR-G N 0.701