PK04894.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK04894.1 T31639_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK04894.1 RRM 116 183
PK04894.1 RRM 213 281

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa006808m Prunus persica ppa006808m N 0.964
MDP0000233630 Malus x domestica MDP0000233630 N 0.949
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.920
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.912
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.912
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.905
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.905
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.905
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.905
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.905
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.891
30068.m002593 Ricinus communis 30068.m002593 N 0.891
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.891
PK12463.1 Cannabis sativa PK12463.1 N 0.891
SB07G001560 Sorghum bicolor Sb07g001560 N 0.891
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.891
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.891
mgf012896m Mimulus guttatus mgf012896m N 0.883
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.883
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.876
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.876
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.869
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.869
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.869
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.869
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.869
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.869
29485.m000140 Ricinus communis 29485.m000140 N 0.861
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.861
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.861
mgf013366m Mimulus guttatus mgf013366m N 0.861
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.861
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.861
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.854
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.854
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.847
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.847
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.832
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.832
ppa009298m Prunus persica ppa009298m N 0.825
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.810
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.810
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.810
PK28889.1 Cannabis sativa PK28889.1 N 0.810
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.803
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.803
29650.m000268 Ricinus communis 29650.m000268 N 0.796
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.796
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.796
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.788
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.788
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.788
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.781
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.781
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.781
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.781
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.774
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.774
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.774
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.774
LjT41H24.20.nd Lotus japonicus LjT41H24.20.nd N 0.752
chr3.LjT02L14.110.nd Lotus japonicus chr3.LjT02L14.110.nd N 0.745
MDP0000223003 Malus x domestica MDP0000223003 N 0.745
mgf014445m Mimulus guttatus mgf014445m N 0.745
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.745
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.745
mgf005336m Mimulus guttatus mgf005336m N 0.745
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.737
SB03G002180 Sorghum bicolor Sb03g002180 N 0.737
B9GIT2_POPTR Populus trichocarpa POPTR_0001s45290 N 0.737
SB10G021290 Sorghum bicolor Sb10g021290 N 0.730
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.730
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.730
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.730
CID13 Arabidopsis thaliana AT5G24440-TAIR-G N 0.730
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.730
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.723
XM_002874153.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001957 N 0.723
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.715
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.715
Cucsa.071470 Cucumis sativus Cucsa.071470 N 0.703