XM_002890997.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.1__3472__AT1G33470.1 T44489_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__3472__AT1G33470.1 RRM 9 67

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G33470 Arabidopsis thaliana AT1G33470-TAIR-G N 0.983
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.780
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.780
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.780
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.780
SB03G046430 Sorghum bicolor Sb03g046430 N 0.780
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.780
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.780
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.780
SB03G041530 Sorghum bicolor Sb03g041530 I 0.780
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.763
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.763
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.763
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.763
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.746
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.746
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.742
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.742
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.742
30170.m013735 Ricinus communis 30170.m013735 I 0.742
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.742
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.738
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.726
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.726
MDP0000181802 Malus x domestica MDP0000181802 N 0.726
MDP0000271231 Malus x domestica MDP0000271231 N 0.726
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.721
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.717
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.712
GRMZM2G180639 Zea mays GRMZM2G180639 N 0.712
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.710
ppa009564m Prunus persica ppa009564m I 0.710
mgf002440m Mimulus guttatus mgf002440m N 0.710
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.710