mgf002440m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf002440m T53592_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf002440m RRM 22 83

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000271231 Malus x domestica MDP0000271231 N 0.903
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.903
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.903
MDP0000181802 Malus x domestica MDP0000181802 N 0.903
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.887
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.887
ppa009564m Prunus persica ppa009564m I 0.871
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.871
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.871
30170.m013735 Ricinus communis 30170.m013735 I 0.855
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.855
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.855
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.839
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.839
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.823
SB03G041530 Sorghum bicolor Sb03g041530 I 0.823
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.823
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.823
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.823
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.823
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.806
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.790
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.774
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.774
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.774
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.774
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.765
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.765
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.758
SB03G046430 Sorghum bicolor Sb03g046430 N 0.758
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.758
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.758
29983.m003293 Ricinus communis 29983.m003293 I 0.754
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.750
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.750
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.746
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.742
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.735
mgf017214m Mimulus guttatus mgf017214m I 0.735
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.731
PK21213.1 Cannabis sativa PK21213.1 I 0.731
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.726
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.726
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.721
ppa009716m Prunus persica ppa009716m I 0.721
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.721
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.716
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.710
XM_002890997.1 Arabidopsis lyrata fgenesh2_kg.1__3472__AT1G33470.1 N 0.710
AT1G33470 Arabidopsis thaliana AT1G33470-TAIR-G N 0.710
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.706
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.706
ppa009964m Prunus persica ppa009964m I 0.706
MDP0000284454 Malus x domestica MDP0000284454 I 0.706
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.701
MDP0000138486 Malus x domestica MDP0000138486 I 0.701