30170.m013735 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 30170.m013735 T48783_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
30170.m013735 RRM 18 79

Links

Other RRM family RBPs
Other Ricinus communis RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.968
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.968
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.935
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.935
ppa009564m Prunus persica ppa009564m I 0.935
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.919
MDP0000271231 Malus x domestica MDP0000271231 N 0.919
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.919
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.919
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.919
MDP0000181802 Malus x domestica MDP0000181802 N 0.919
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.903
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.903
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.887
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.887
SB03G041530 Sorghum bicolor Sb03g041530 I 0.887
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.887
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.871
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.871
mgf002440m Mimulus guttatus mgf002440m N 0.855
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.855
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.855
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.855
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.839
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.823
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.806
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.790
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.790
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.790
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.790
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.790
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.776
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.776
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.776
PK21213.1 Cannabis sativa PK21213.1 I 0.776
SB03G046430 Sorghum bicolor Sb03g046430 N 0.774
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.774
29983.m003293 Ricinus communis 29983.m003293 I 0.769
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.765
CU179634_3 Medicago truncatula CU179634_3 I 0.761
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.761
ppa009716m Prunus persica ppa009716m I 0.750
PK14266.1 Cannabis sativa PK14266.1 I 0.750
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.750
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.750
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.750
mgf017214m Mimulus guttatus mgf017214m I 0.750
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.750
30076.m004440 Ricinus communis 30076.m004440 I 0.750
MDP0000744398 Malus x domestica MDP0000744398 I 0.750
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.750
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.750
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.750
MDP0000548950 Malus x domestica MDP0000548950 I 0.750
XM_002890997.1 Arabidopsis lyrata fgenesh2_kg.1__3472__AT1G33470.1 N 0.742
AT1G33470 Arabidopsis thaliana AT1G33470-TAIR-G N 0.742
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.735
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.735
MDP0000488395 Malus x domestica MDP0000488395 I 0.735
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.735
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.735
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.735
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.735
ppa016222m Prunus persica ppa016222m I 0.735
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.735
MDP0000138486 Malus x domestica MDP0000138486 I 0.731
ppa018603m Prunus persica ppa018603m I 0.725
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.725
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.721
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.721
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.721
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.721
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.710
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.710
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.706
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.706
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.706
ppa009964m Prunus persica ppa009964m I 0.706
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.706
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.706
MDP0000284454 Malus x domestica MDP0000284454 I 0.706
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.701