ISCW002531 (Ixodes scapularis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ISCW002531 T44819_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.736
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ISCW002531-PA RRM 5 67
ISCW002531-PA RRM 101 166

Links

Other RRM family RBPs
Other Ixodes scapularis RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ISCW010321 Ixodes scapularis ISCW010321 I 0.814
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.775
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.775
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.767
ISCW010322 Ixodes scapularis ISCW010322 I 0.752
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.744
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.744
GF17608 Drosophila ananassae FBgn0094626 I 0.736
B52 Drosophila melanogaster FBgn0004587 D 0.736
AGAP004592 Anopheles gambiae AGAP004592 I 0.736
GK13948 Drosophila willistoni FBgn0215954 I 0.736
GJ24113 Drosophila virilis FBgn0211197 I 0.729
GH18528 Drosophila grimshawi FBgn0125995 I 0.729
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.729
GI22065 Drosophila mojavensis FBgn0144794 I 0.729
GL23543 Drosophila persimilis FBgn0161133 I 0.729
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.721
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.721
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.721
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.721
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.713
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.713
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.713
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.713
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.713
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.713
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.713
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.713
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.713
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.713
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.713
AAH71160 Xenopus laevis AAH71160 I 0.713
Srsf4 Mus musculus ENSMUSG00000028911 I 0.713
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.713
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.713
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.713
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.713
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.713
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.713
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.713
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.713
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.713
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.713
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.713
SRSF4 Homo sapiens ENSG00000116350 I 0.713
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.713
PHUM290500 Pediculus humanus PHUM290500 I 0.705
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.705
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.705
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.705
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.705
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.705