AAH71160 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH71160 T59515_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.721
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH71160 RRM 6 68
AAH71160 RRM 116 181

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

129 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.984
AAH44085 Xenopus laevis AAH44085 I 0.977
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.907
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.876
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.876
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.876
srsf5a Danio rerio ENSDARG00000029818 I 0.860
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.860
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.860
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.853
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.806
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.806
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.806
srsf5b Danio rerio ENSDARG00000027734 I 0.798
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.791
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.791
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.791
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.791
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.783
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.783
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.783
Srsf5 Mus musculus ENSMUSG00000021134 I 0.783
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.783
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.783
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.783
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.783
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.783
SRSF5 Homo sapiens ENSG00000100650 D 0.783
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.783
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.783
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.783
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.783
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.783
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.783
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.783
SRSF5 Felis catus ENSFCAG00000008848 I 0.783
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.783
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.783
LOC100053264 Equus caballus ENSECAG00000026873 I 0.783
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.783
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.775
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.775
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.775
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.767
Srsf4 Mus musculus ENSMUSG00000028911 I 0.767
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.767
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.767
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.767
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.767
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.767
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.767
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.767
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.767
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.767
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.767
SRSF4 Homo sapiens ENSG00000116350 I 0.767
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.767
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.767
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.767
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.767
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.767
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.767
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.767
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.767
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.760
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.760
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.760
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.760
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.760
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.752
ISCW010321 Ixodes scapularis ISCW010321 I 0.752
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.752
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.744
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.744
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.744
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.744
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.744
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.744
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.736
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.736
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.736
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.736
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.736
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.736
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.736
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.736
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.736
PHUM290500 Pediculus humanus PHUM290500 I 0.729
SRSF6 Homo sapiens ENSG00000124193 I 0.729
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.729
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.729
Srsf6 Mus musculus ENSMUSG00000016921 I 0.729
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.729
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.729
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.729
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.729
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.729
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.729
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.721
GF17608 Drosophila ananassae FBgn0094626 I 0.721
ISCW014220 Ixodes scapularis ISCW014220 I 0.721
GK13948 Drosophila willistoni FBgn0215954 I 0.721
ISCW010322 Ixodes scapularis ISCW010322 I 0.721
B52 Drosophila melanogaster FBgn0004587 D 0.721
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.721
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.721
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.721
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.713
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.713
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.713
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.713
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.713
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.713
ISCW002531 Ixodes scapularis ISCW002531 I 0.713
srsf6b Danio rerio ENSDARG00000016783 I 0.713
srsf6a Danio rerio ENSDARG00000013729 I 0.713
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.713
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.713
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.713
GJ24113 Drosophila virilis FBgn0211197 I 0.713
GL23543 Drosophila persimilis FBgn0161133 I 0.713
GI22065 Drosophila mojavensis FBgn0144794 I 0.713
GH18528 Drosophila grimshawi FBgn0125995 I 0.713
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.705
AAH46668 Xenopus laevis AAH46668 I 0.705
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.705
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.705
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.705
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.705