B9HP82_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0009s04640 T45573_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s04640.1 RRM 54 124

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GIV6_POPTR Populus trichocarpa POPTR_0001s25520 N 0.930
Glyma08g45200.1 Glycine max Glyma08g45200.1 N 0.901
PK25868.1 Cannabis sativa PK25868.1 N 0.873
29751.m001798 Ricinus communis 29751.m001798 N 0.873
Glyma18g07500.1 Glycine max Glyma18g07500.1 N 0.873
GSVIVG00024805001 Vitis vinifera GSVIVG00024805001 N 0.859
LjB08M07.70.nc Lotus japonicus LjB08M07.70.nc N 0.845
MDP0000238655 Malus x domestica MDP0000238655 N 0.831
BGIOSIBCE010473 Oryza indica BGIOSIBCE010473 N 0.817
Cucsa.146830 Cucumis sativus Cucsa.146830 N 0.817
LOC_Os03g15890 Oryza sativa LOC_Os03g15890 N 0.817
Sb01g040100 Sorghum bicolor Sb01g040100 N 0.803
mg018590m Mimulus guttatus mg018590m N 0.775
BRADI1G67145 Brachypodium distachyon BRADI1G67145 N 0.775
GRMZM2G073567 Zea mays GRMZM2G073567 N 0.761
GSVIVG00019390001 Vitis vinifera GSVIVG00019390001 N 0.718
B9GWT8_POPTR Populus trichocarpa POPTR_0003s13030 N 0.718
cassava28819.valid.m1 Manihot esculenta cassava28819.valid.m1 N 0.704
cassava28821.valid.m1 Manihot esculenta cassava28821.valid.m1 N 0.704
MDP0000140238 Malus x domestica MDP0000140238 N 0.704
PDK_20s1416111g002 Phoenix dactylifera PDK_20s1416111g002 N 0.704
cassava28820.valid.m1 Manihot esculenta cassava28820.valid.m1 N 0.704