CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G073567
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G073567
T54081_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G073567_P01
RRM
42
112
LYVTGLSARVTDRDLEKHFSTEGEVIDASVVYDPWTRESRGFGFVTMAAVKDADRCIKYLDRSVLQGRVIT
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Sb01g040100
Sorghum bicolor
Sb01g040100
N
0.930
BGIOSIBCE010473
Oryza indica
BGIOSIBCE010473
N
0.901
LOC_Os03g15890
Oryza sativa
LOC_Os03g15890
N
0.901
BRADI1G67145
Brachypodium distachyon
BRADI1G67145
N
0.873
B9HP82_POPTR
Populus trichocarpa
POPTR_0009s04640
N
0.761
B9GIV6_POPTR
Populus trichocarpa
POPTR_0001s25520
N
0.761
29751.m001798
Ricinus communis
29751.m001798
N
0.761
GSVIVG00024805001
Vitis vinifera
GSVIVG00024805001
N
0.761
Glyma08g45200.1
Glycine max
Glyma08g45200.1
N
0.746
LjB08M07.70.nc
Lotus japonicus
LjB08M07.70.nc
N
0.746
MDP0000238655
Malus x domestica
MDP0000238655
N
0.732
PK25868.1
Cannabis sativa
PK25868.1
N
0.732
XM_002892349.1
Arabidopsis lyrata
fgenesh2_kg.1__710__AT1G07350.1
N
0.732
AT1G07350
Arabidopsis thaliana
AT1G07350-TAIR-G
N
0.718
Glyma18g07500.1
Glycine max
Glyma18g07500.1
N
0.718
PDK_20s1416111g002
Phoenix dactylifera
PDK_20s1416111g002
N
0.718
mg018590m
Mimulus guttatus
mg018590m
N
0.718
cassava28821.valid.m1
Manihot esculenta
cassava28821.valid.m1
N
0.704
B9GWT8_POPTR
Populus trichocarpa
POPTR_0003s13030
N
0.704
GSVIVG00019390001
Vitis vinifera
GSVIVG00019390001
N
0.704
cassava28819.valid.m1
Manihot esculenta
cassava28819.valid.m1
N
0.704
cassava28820.valid.m1
Manihot esculenta
cassava28820.valid.m1
N
0.704