CBN16301 (Caenorhabditis brenneri)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBN16301 T34042_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.743
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBN16301 RRM 80 149

Links

Other RRM family RBPs
Other Caenorhabditis brenneri RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBG03741 Caenorhabditis briggsae CBG03741 I 0.986
CBN00953 Caenorhabditis brenneri CBN00953 I 0.986
CBN10290 Caenorhabditis brenneri CBN10290 I 0.986
CRE07990 Caenorhabditis remanei CRE07990 I 0.986
CJA15148 Caenorhabditis japonica CJA15148 I 0.943
pabp-2 Caenorhabditis elegans C17E4.5 I 0.929
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.775
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.771
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.771
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.757
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.757
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.757
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.746
PPA11675 Pristionchus pacificus PPA11675 I 0.746
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.743
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.743
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.743
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.743
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.743
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.743
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.743
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.743
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.743
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.743
PABPN1 Homo sapiens ENSG00000100836 D 0.743
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.743
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.743
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.743
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.743
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.743
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.743
LOC100055599 Equus caballus ENSECAG00000011652 I 0.743
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.743
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.743
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.743
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.732
AAH45063 Xenopus laevis AAH45063 I 0.729
AAG36902 Xenopus laevis AAG36902 I 0.729
AAH73657 Xenopus laevis AAH73657 I 0.729
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.729
Q9DDY9 Xenopus laevis Q9DDY9 I 0.729
AAR26262 Xenopus laevis AAR26262 I 0.729
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.729
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.729
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.729
PHUM037550 Pediculus humanus PHUM037550 I 0.729
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.729
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.718
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.714
156918 Helobdella robusta 156918 I 0.714
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.714
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.714
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.714
pabpn1 Danio rerio ENSDARG00000045373 I 0.704
LOAG_03634 Loa loa LOAG_03634 I 0.704
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.704
Bm1_48895 Brugia malayi Bm1_48895 I 0.704
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.700