e_gw.21.136.1 (Nematostella vectensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.21.136.1 T50168_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.21.136.1 RRM 42 111

Links

Other RRM family RBPs
Other Nematostella vectensis RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.930
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.859
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.843
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.831
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.831
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.814
PABPN1 Homo sapiens ENSG00000100836 D 0.803
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.803
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.803
LOC100055599 Equus caballus ENSECAG00000011652 I 0.803
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.803
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.803
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.803
CJA15148 Caenorhabditis japonica CJA15148 I 0.803
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.803
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.803
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.803
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.803
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.803
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.803
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.803
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.803
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.803
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.803
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.803
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.803
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.803
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.803
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.803
pabpn1 Danio rerio ENSDARG00000045373 I 0.800
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.800
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.789
CBG03741 Caenorhabditis briggsae CBG03741 I 0.789
AAH45063 Xenopus laevis AAH45063 I 0.789
CBN00953 Caenorhabditis brenneri CBN00953 I 0.789
CBN10290 Caenorhabditis brenneri CBN10290 I 0.789
CRE07990 Caenorhabditis remanei CRE07990 I 0.789
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.789
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.786
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.786
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.786
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.786
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.786
PPA11675 Pristionchus pacificus PPA11675 I 0.786
AAR26262 Xenopus laevis AAR26262 I 0.775
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.775
AAH73657 Xenopus laevis AAH73657 I 0.775
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.775
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.775
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.775
AAG36902 Xenopus laevis AAG36902 I 0.775
Q9DDY9 Xenopus laevis Q9DDY9 I 0.775
CBN16301 Caenorhabditis brenneri CBN16301 I 0.775
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.775
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.775
Bm1_48895 Brugia malayi Bm1_48895 I 0.771
LOAG_03634 Loa loa LOAG_03634 I 0.771
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.771
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.761
pabp-2 Caenorhabditis elegans C17E4.5 I 0.746
PHUM037550 Pediculus humanus PHUM037550 I 0.746
156918 Helobdella robusta 156918 I 0.746
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.746
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.732
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.732
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.732
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.729
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.718
GP3.065690 Batrachochytrium dendrobatidis GP3.065690 N 0.718
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.718
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.704
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.704
PABPN1L Homo sapiens ENSG00000205022 I 0.704
PABPN1L Gasterosteus aculeatus ENSGACG00000015428 I 0.704