CJA15148 (Caenorhabditis japonica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CJA15148 T34152_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.757
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CJA15148 RRM 79 148

Links

Other RRM family RBPs
Other Caenorhabditis japonica RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBN00953 Caenorhabditis brenneri CBN00953 I 0.957
CBG03741 Caenorhabditis briggsae CBG03741 I 0.957
CRE07990 Caenorhabditis remanei CRE07990 I 0.957
CBN10290 Caenorhabditis brenneri CBN10290 I 0.957
CBN16301 Caenorhabditis brenneri CBN16301 I 0.943
pabp-2 Caenorhabditis elegans C17E4.5 I 0.929
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.803
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.800
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.786
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.771
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.771
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.761
PPA11675 Pristionchus pacificus PPA11675 I 0.761
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.757
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.757
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.757
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.757
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.757
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.757
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.757
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.757
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.757
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.757
PABPN1 Homo sapiens ENSG00000100836 D 0.757
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.757
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.757
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.757
LOC100055599 Equus caballus ENSECAG00000011652 I 0.757
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.757
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.757
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.757
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.757
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.757
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.757
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.746
AAR26262 Xenopus laevis AAR26262 I 0.743
AAH73657 Xenopus laevis AAH73657 I 0.743
AAH45063 Xenopus laevis AAH45063 I 0.743
Q9DDY9 Xenopus laevis Q9DDY9 I 0.743
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.743
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.743
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.743
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.743
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.743
AAG36902 Xenopus laevis AAG36902 I 0.743
PHUM037550 Pediculus humanus PHUM037550 I 0.743
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.743
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.729
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.729
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.729
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.729
pabpn1 Danio rerio ENSDARG00000045373 I 0.718
LOAG_03634 Loa loa LOAG_03634 I 0.718
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.718
Bm1_48895 Brugia malayi Bm1_48895 I 0.718
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.714
156918 Helobdella robusta 156918 I 0.714
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.704
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.704
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.704
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.704
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.704
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.700