SNAPOd2T00018428001 (Oikopleura dioica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 SNAPOd2T00018428001 T48427_0.6 Genoscope (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.771
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00018428001 RRM 92 161

Links

Other RRM family RBPs
Other Oikopleura dioica RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SNAPOd2T00003132001 Oikopleura dioica SNAPOd2T00003132001 I 0.829
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.771
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.771
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.771
PABPN1 Homo sapiens ENSG00000100836 D 0.771
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.771
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.771
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.771
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.771
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.771
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.771
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.771
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.771
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.771
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.771
LOC100055599 Equus caballus ENSECAG00000011652 I 0.771
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.771
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.771
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.771
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.771
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.771
AAR26262 Xenopus laevis AAR26262 I 0.757
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.757
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.757
AAH73657 Xenopus laevis AAH73657 I 0.757
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.757
Q9DDY9 Xenopus laevis Q9DDY9 I 0.757
AAH45063 Xenopus laevis AAH45063 I 0.757
AAG36902 Xenopus laevis AAG36902 I 0.757
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.743
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.743
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.743
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.743
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.729
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.714
pabpn1 Danio rerio ENSDARG00000045373 I 0.704
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.700
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.700