69344 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 69344 T48846_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.717
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.717
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.717
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
69344 RRM 13 83
69344 RRM 101 169
69344 RRM 193 262
69344 RRM 296 364

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.725
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.721
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.714
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.714
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.714
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.714
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.714
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.710
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.710
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.710
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.710
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.710
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.710
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.710
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.710
PABPC1 Homo sapiens ENSG00000070756 D 0.710
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.710
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.710
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.710
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.710
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.710
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.710
185682 Helobdella robusta 185682 I 0.707
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.707
ISCW014211 Ixodes scapularis ISCW014211 I 0.705
AGAP011092 Anopheles gambiae AGAP011092 I 0.705
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.703
PHUM617090 Pediculus humanus PHUM617090 I 0.701