185682 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 185682 T48587_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.732
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.732
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.732
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
185682 RRM 13 83
185682 RRM 101 169
185682 RRM 193 262
185682 RRM 297 365

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

101 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.757
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.742
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.742
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.739
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.739
PABPC1 Homo sapiens ENSG00000070756 D 0.739
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.739
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.739
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.739
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.739
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.739
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.739
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.739
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.739
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.739
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.739
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.737
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.735
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.735
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.735
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.735
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.735
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.735
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.735
AAEL010318 Aedes aegypti AAEL010318 I 0.733
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.733
PHUM617090 Pediculus humanus PHUM617090 I 0.733
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.733
PABPC4 Gallus gallus ENSGALG00000003800 I 0.731
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.731
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.731
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.731
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.731
ISCW014211 Ixodes scapularis ISCW014211 I 0.730
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.728
AAH73435 Xenopus laevis AAH73435 I 0.728
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.726
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.726
AAI08463 Xenopus laevis AAI08463 I 0.724
AAH72110 Xenopus laevis AAH72110 I 0.724
AAH52100 Xenopus laevis AAH52100 I 0.724
CAA40721 Xenopus laevis CAA40721 I 0.724
P20965 Xenopus laevis P20965 I 0.724
pabpc1a Danio rerio ENSDARG00000017219 I 0.724
Q6IP09 Xenopus laevis Q6IP09 I 0.724
pabpc1b Danio rerio ENSDARG00000021140 I 0.722
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.722
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.721
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.721
AAA60936 Xenopus laevis AAA60936 I 0.721
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.720
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.719
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.719
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.719
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.719
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.719
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.719
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.717
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.717
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.714
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.714
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.714
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.714
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.713
GK19652 Drosophila willistoni FBgn0221650 I 0.713
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.712
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.710
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.710
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.710
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.710
PABPC4 Homo sapiens ENSG00000090621 D 0.710
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.710
LOC100054235 Equus caballus ENSECAG00000009396 I 0.710
pabpc4 Danio rerio ENSDARG00000059259 I 0.710
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.710
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.710
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.710
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.710
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.710
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.710
GJ21671 Drosophila virilis FBgn0208790 I 0.709
AGAP011092 Anopheles gambiae AGAP011092 I 0.708
69344 Helobdella robusta 69344 I 0.707
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.707
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.707
Gm10110 Mus musculus ENSMUSG00000062093 I 0.707
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.707
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.707
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.707
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.707
GI18654 Drosophila mojavensis FBgn0141393 I 0.706
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.706
GH21052 Drosophila grimshawi FBgn0128514 I 0.706
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.703
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.703
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.703
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.703
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.703
LOAG_01058 Loa loa LOAG_01058 I 0.702
Bm1_16080 Brugia malayi Bm1_16080 I 0.702
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.700