CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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185682
(
Helobdella robusta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
185682
T48587_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.732
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.732
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.732
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.704
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
185682
RRM
13
83
LYVGDLHPDVTEAMLFEKFSTAGAVLSIRVCRDMVTRRSLGYAYVNFQLPADAERALDTMNFDSIKGKPCR
185682
RRM
101
169
IFIKNLDKSIDTKSLYDTFSAFGNILSCKIAMDTNGSKGYGFVHFETEEAANSSIEKVNGMLLNGKKVF
185682
RRM
193
262
VYVKNFDDLFDDNKLRDLFSKCGTVVSCKVMCNEAGESKGFGFVSFTDHESAQKAVDDLNNMDLGNNRVL
185682
RRM
297
365
LYVKNLDDKVDDEALNNEFKAFGKITSAKVMYENGRSKGFGFVCFNSPEEATKAVTEMNGKIVGGKPLY
Links
Other
RRM
family RBPs
Other
Helobdella robusta
RBPs
101 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1.C_1790010
Capitella teleta
estExt_Genewise1.C_1790010
I
0.757
PABPC3
Gasterosteus aculeatus
ENSGACG00000003572
I
0.742
PABPC3
Takifugu rubripes
ENSTRUG00000011577
I
0.742
ENSGACG00000003771
Gasterosteus aculeatus
ENSGACG00000003771
I
0.739
PABPC1
Macaca mulatta
ENSMMUG00000017786
I
0.739
PABPC1
Homo sapiens
ENSG00000070756
D
0.739
ENSOCUG00000004354
Oryctolagus cuniculus
ENSOCUG00000004354
I
0.739
LOC100413032
Callithrix jacchus
ENSCJAG00000015833
I
0.739
ENSOPRG00000009667
Ochotona princeps
ENSOPRG00000009667
I
0.739
ENSSSCG00000006063
Sus scrofa
ENSSSCG00000006063
I
0.739
ENSTTRG00000004689
Tursiops truncatus
ENSTTRG00000004689
I
0.739
ENSPVAG00000016640
Pteropus vampyrus
ENSPVAG00000016640
I
0.739
ENSPPYG00000018790
Pongo pygmaeus
ENSPPYG00000018790
I
0.739
ENSCAFG00000000567
Canis familiaris
ENSCAFG00000000567
I
0.739
ENSOCUG00000023935
Oryctolagus cuniculus
ENSOCUG00000023935
I
0.739
ENSLAFG00000013994
Loxodonta africana
ENSLAFG00000013994
I
0.739
BGIBMGA003469
Bombyx mori
BGIBMGA003469
I
0.737
PABPC3
Oryzias latipes
ENSORLG00000002691
I
0.735
PABPC1
Taeniopygia guttata
ENSTGUG00000012067
I
0.735
Pabpc1
Mus musculus
ENSMUSG00000022283
I
0.735
ENSOANG00000007307
Ornithorhynchus anatinus
ENSOANG00000007307
I
0.735
ENSACAG00000016470
Anolis carolinensis
ENSACAG00000016470
I
0.735
Pabpc1
Rattus norvegicus
ENSRNOG00000008639
I
0.735
XR_023909.1
Pan troglodytes
ENSPTRG00000020475
I
0.735
AAEL010318
Aedes aegypti
AAEL010318
I
0.733
CPIJ007980
Culex quinquefasciatus
CPIJ007980
I
0.733
PHUM617090
Pediculus humanus
PHUM617090
I
0.733
CpipJ_CPIJ007980
Culex pipiens
CpipJ_CPIJ007980
I
0.733
PABPC4
Gallus gallus
ENSGALG00000003800
I
0.731
XR_030308.1
Monodelphis domestica
ENSMODG00000006222
I
0.731
ENSOANG00000010001
Ornithorhynchus anatinus
ENSOANG00000010001
I
0.731
ENSTNIG00000009153
Tetraodon nigroviridis
ENSTNIG00000009153
I
0.731
pabpc1
Xenopus tropicalis
ENSXETG00000006635
I
0.731
ISCW014211
Ixodes scapularis
ISCW014211
I
0.730
ENSTRUG00000003767
Takifugu rubripes
ENSTRUG00000003767
I
0.728
AAH73435
Xenopus laevis
AAH73435
I
0.728
e_gw.313.40.1
Branchiostoma floridae
e_gw.313.40.1
I
0.726
gw.1.65.1
Branchiostoma floridae
gw.1.65.1
I
0.726
AAI08463
Xenopus laevis
AAI08463
I
0.724
AAH72110
Xenopus laevis
AAH72110
I
0.724
AAH52100
Xenopus laevis
AAH52100
I
0.724
CAA40721
Xenopus laevis
CAA40721
I
0.724
P20965
Xenopus laevis
P20965
I
0.724
pabpc1a
Danio rerio
ENSDARG00000017219
I
0.724
Q6IP09
Xenopus laevis
Q6IP09
I
0.724
pabpc1b
Danio rerio
ENSDARG00000021140
I
0.722
XM_001365232.1
Monodelphis domestica
ENSMODG00000017657
I
0.722
PABPC4
Taeniopygia guttata
ENSTGUG00000001266
I
0.721
LOC100411130
Callithrix jacchus
ENSCJAG00000018953
I
0.721
AAA60936
Xenopus laevis
AAA60936
I
0.721
ENSORLG00000003008
Oryzias latipes
ENSORLG00000003008
I
0.720
nasonia_NCBI_hmm394743
Nasonia vitripennis
nasonia_NCBI_hmm394743
I
0.719
amel4_ncbi_hmm2036
Apis mellifera
amel4_ncbi_hmm2036
I
0.719
amel4_ncbi_hmm1700
Apis mellifera
amel4_ncbi_hmm1700
I
0.719
nasonia_NCBI_hmm390743
Nasonia vitripennis
nasonia_NCBI_hmm390743
I
0.719
nasonia_NCBI_hmm386743
Nasonia vitripennis
nasonia_NCBI_hmm386743
I
0.719
amel4_ncbi_hmm1364
Apis mellifera
amel4_ncbi_hmm1364
I
0.719
ENSTSYG00000004229
Tarsius syrichta
ENSTSYG00000004229
I
0.717
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.717
PABPC4
Oryctolagus cuniculus
ENSOCUG00000000562
I
0.714
PABPC4
Erinaceus europaeus
ENSEEUG00000002962
I
0.714
PABPC4
Cavia porcellus
ENSCPOG00000009552
I
0.714
PABPC4
Ochotona princeps
ENSOPRG00000011984
I
0.714
PABPC3
Tetraodon nigroviridis
ENSTNIG00000013307
I
0.713
GK19652
Drosophila willistoni
FBgn0221650
I
0.713
DGIL_AUG5s5076g2t1
Acyrtosiphon pisum
DGIL_AUG5s5076g2t1
I
0.712
PABPC4
Sus scrofa
ENSSSCG00000003660
I
0.710
PABPC4
Pan troglodytes
ENSPTRG00000000573
I
0.710
ENSPPYG00000001506
Pongo pygmaeus
ENSPPYG00000001506
I
0.710
PABPC4
Loxodonta africana
ENSLAFG00000000151
I
0.710
PABPC4
Homo sapiens
ENSG00000090621
D
0.710
PABPC4
Gorilla gorilla
ENSGGOG00000004002
I
0.710
LOC100054235
Equus caballus
ENSECAG00000009396
I
0.710
pabpc4
Danio rerio
ENSDARG00000059259
I
0.710
PABPC4
Canis familiaris
ENSCAFG00000003081
I
0.710
Ame_R001741
Ailuropoda melanoleuca
Ame_R001741
I
0.710
ENSMICG00000000431
Microcebus murinus
ENSMICG00000000431
I
0.710
A4IFC3_BOVIN
Bos taurus
ENSBTAG00000017125
I
0.710
PABPC4
Macaca mulatta
ENSMMUG00000007497
I
0.710
Q8QGJ7_FUGRU
Takifugu rubripes
ENSTRUG00000005907
I
0.710
GJ21671
Drosophila virilis
FBgn0208790
I
0.709
AGAP011092
Anopheles gambiae
AGAP011092
I
0.708
69344
Helobdella robusta
69344
I
0.707
PABPC4
Tetraodon nigroviridis
ENSTNIG00000016902
I
0.707
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.707
Gm10110
Mus musculus
ENSMUSG00000062093
I
0.707
A6MKJ4_CALJA
Callithrix jacchus
ENSCJAG00000002512
I
0.707
PABPC3
Macaca mulatta
ENSMMUG00000020835
I
0.707
PABPC4
Oryzias latipes
ENSORLG00000017479
I
0.707
Pabpc2
Rattus norvegicus
ENSRNOG00000014527
I
0.707
GI18654
Drosophila mojavensis
FBgn0141393
I
0.706
fgenesh1_pm.scaffold_278000002
Nematostella vectensis
fgenesh1_pm.scaffold_278000002
I
0.706
GH21052
Drosophila grimshawi
FBgn0128514
I
0.706
PABPC4
Gasterosteus aculeatus
ENSGACG00000007179
I
0.703
Pabpc2
Mus musculus
ENSMUSG00000051732
I
0.703
ENSPPYG00000005219
Pongo pygmaeus
ENSPPYG00000005219
I
0.703
XM_001367383.1
Monodelphis domestica
ENSMODG00000017105
I
0.703
Q2VIP2_PANTR
Pan troglodytes
ENSPTRG00000022593
I
0.703
LOAG_01058
Loa loa
LOAG_01058
I
0.702
Bm1_16080
Brugia malayi
Bm1_16080
I
0.702
e_gw1.115.135.1
Lottia gigantea
e_gw1.115.135.1
I
0.700