CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
PHUM617090
(
Pediculus humanus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PHUM617090
T45404_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
pAbp
M130_0.6
Drosophila melanogaster
GAAAAHV
RNAcompete
Ray et al.(2013)
RNCMPT00139
0.770
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.768
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.750
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.750
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.750
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.708
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM617090-PA
RRM
13
83
LYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALDTMNYDPLKGKPIR
PHUM617090-PA
RRM
101
170
VFIKNLDKSIDNKAMYDTFSTFGNILSCKVAQDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVF
PHUM617090-PA
RRM
194
264
VYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASLNGKEIVEGKPLF
PHUM617090-PA
RRM
298
366
LYVKNIDDNIDDERLRKEFTPFGTITSAKVMLEDGRSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLY
Links
Other
RRM
family RBPs
Other
Pediculus humanus
RBPs
146 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm390743
Nasonia vitripennis
nasonia_NCBI_hmm390743
I
0.875
nasonia_NCBI_hmm394743
Nasonia vitripennis
nasonia_NCBI_hmm394743
I
0.875
BGIBMGA003469
Bombyx mori
BGIBMGA003469
I
0.875
nasonia_NCBI_hmm386743
Nasonia vitripennis
nasonia_NCBI_hmm386743
I
0.875
amel4_ncbi_hmm2036
Apis mellifera
amel4_ncbi_hmm2036
I
0.865
amel4_ncbi_hmm1364
Apis mellifera
amel4_ncbi_hmm1364
I
0.865
amel4_ncbi_hmm1700
Apis mellifera
amel4_ncbi_hmm1700
I
0.865
AAEL010318
Aedes aegypti
AAEL010318
I
0.836
CpipJ_CPIJ007980
Culex pipiens
CpipJ_CPIJ007980
I
0.829
CPIJ007980
Culex quinquefasciatus
CPIJ007980
I
0.829
AGAP011092
Anopheles gambiae
AGAP011092
I
0.826
DGIL_AUG5s5076g2t1
Acyrtosiphon pisum
DGIL_AUG5s5076g2t1
I
0.808
GI18654
Drosophila mojavensis
FBgn0141393
I
0.794
GF12652
Drosophila ananassae
FBgn0089688
I
0.791
GH21052
Drosophila grimshawi
FBgn0128514
I
0.787
ISCW014211
Ixodes scapularis
ISCW014211
I
0.787
GJ21671
Drosophila virilis
FBgn0208790
I
0.787
GK19652
Drosophila willistoni
FBgn0221650
I
0.784
GD11341
Drosophila simulans
FBgn0183090
I
0.784
GG21846
Drosophila erecta
FBgn0114024
I
0.784
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.781
GE11925
Drosophila yakuba
FBgn0229707
I
0.780
GA18673-RA
Drosophila pseudoobscura
FBgn0078673
I
0.780
pAbp
Drosophila melanogaster
FBgn0261619
D
0.780
GM21847
Drosophila sechellia
FBgn0176724
I
0.780
GL11548
Drosophila persimilis
FBgn0149157
I
0.780
BDE_estExt_fgenesh1_pg.C_380037
Daphnia pulex
BDE_estExt_fgenesh1_pg.C_380037
I
0.777
DGIL_AUG5s1591g1t1
Acyrtosiphon pisum
DGIL_AUG5s1591g1t1
I
0.776
ENSMICG00000000431
Microcebus murinus
ENSMICG00000000431
I
0.774
PABPC4
Loxodonta africana
ENSLAFG00000000151
I
0.774
PABPC4
Pan troglodytes
ENSPTRG00000000573
I
0.774
PABPC4
Sus scrofa
ENSSSCG00000003660
I
0.774
A4IFC3_BOVIN
Bos taurus
ENSBTAG00000017125
I
0.774
PABPC4
Cavia porcellus
ENSCPOG00000009552
I
0.774
PABPC4
Canis familiaris
ENSCAFG00000003081
I
0.774
pabpc1
Xenopus tropicalis
ENSXETG00000006635
I
0.774
PABPC4
Gorilla gorilla
ENSGGOG00000004002
I
0.774
ENSPPYG00000001506
Pongo pygmaeus
ENSPPYG00000001506
I
0.774
PABPC4
Homo sapiens
ENSG00000090621
D
0.774
Gm10110
Mus musculus
ENSMUSG00000062093
I
0.774
A6MKJ4_CALJA
Callithrix jacchus
ENSCJAG00000002512
I
0.774
PABPC4
Erinaceus europaeus
ENSEEUG00000002962
I
0.774
PABPC4
Macaca mulatta
ENSMMUG00000007497
I
0.774
LOC100054235
Equus caballus
ENSECAG00000009396
I
0.774
DGIL_AUG5s9152g1t1
Acyrtosiphon pisum
DGIL_AUG5s9152g1t1
I
0.772
P20965
Xenopus laevis
P20965
I
0.770
AAH73435
Xenopus laevis
AAH73435
I
0.770
AAH52100
Xenopus laevis
AAH52100
I
0.770
PABPC4
Taeniopygia guttata
ENSTGUG00000001266
I
0.770
PABPC4
Ochotona princeps
ENSOPRG00000011984
I
0.770
CAA40721
Xenopus laevis
CAA40721
I
0.770
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.770
PABPC4
Oryctolagus cuniculus
ENSOCUG00000000562
I
0.770
ENSGACG00000003771
Gasterosteus aculeatus
ENSGACG00000003771
I
0.767
PABPC4
Gallus gallus
ENSGALG00000003800
I
0.767
Q6IP09
Xenopus laevis
Q6IP09
I
0.767
AAI08463
Xenopus laevis
AAI08463
I
0.767
AAA60936
Xenopus laevis
AAA60936
I
0.767
AAH72110
Xenopus laevis
AAH72110
I
0.767
estExt_Genewise1.C_1790010
Capitella teleta
estExt_Genewise1.C_1790010
I
0.765
XM_001365232.1
Monodelphis domestica
ENSMODG00000017657
I
0.764
PABPC4
Oryzias latipes
ENSORLG00000017479
I
0.763
PABPC1
Taeniopygia guttata
ENSTGUG00000012067
I
0.763
Pabpc1
Mus musculus
ENSMUSG00000022283
I
0.763
ENSACAG00000016470
Anolis carolinensis
ENSACAG00000016470
I
0.763
Pabpc1
Rattus norvegicus
ENSRNOG00000008639
I
0.763
ENSOANG00000007307
Ornithorhynchus anatinus
ENSOANG00000007307
I
0.763
ENSPPYG00000018790
Pongo pygmaeus
ENSPPYG00000018790
I
0.760
ENSOCUG00000023935
Oryctolagus cuniculus
ENSOCUG00000023935
I
0.760
ENSOCUG00000004354
Oryctolagus cuniculus
ENSOCUG00000004354
I
0.760
ENSOANG00000010001
Ornithorhynchus anatinus
ENSOANG00000010001
I
0.760
XR_030308.1
Monodelphis domestica
ENSMODG00000006222
I
0.760
ENSLAFG00000013994
Loxodonta africana
ENSLAFG00000013994
I
0.760
PABPC1
Macaca mulatta
ENSMMUG00000017786
I
0.760
ENSOPRG00000009667
Ochotona princeps
ENSOPRG00000009667
I
0.760
D3ZEY8_RAT
Rattus norvegicus
ENSRNOG00000028592
I
0.760
ENSTTRG00000004689
Tursiops truncatus
ENSTTRG00000004689
I
0.760
ENSCAFG00000000567
Canis familiaris
ENSCAFG00000000567
I
0.760
LOC100413032
Callithrix jacchus
ENSCJAG00000015833
I
0.760
ENSPVAG00000016640
Pteropus vampyrus
ENSPVAG00000016640
I
0.760
PABPC1
Homo sapiens
ENSG00000070756
D
0.760
ENSSSCG00000006063
Sus scrofa
ENSSSCG00000006063
I
0.760
PABPC3
Gasterosteus aculeatus
ENSGACG00000003572
I
0.760
PABPC3
Takifugu rubripes
ENSTRUG00000011577
I
0.756
PABPC4
Gasterosteus aculeatus
ENSGACG00000007179
I
0.756
pabpc4
Danio rerio
ENSDARG00000059259
I
0.756
ENSTRUG00000003767
Takifugu rubripes
ENSTRUG00000003767
I
0.756
XR_023909.1
Pan troglodytes
ENSPTRG00000020475
I
0.756
ENSTNIG00000009153
Tetraodon nigroviridis
ENSTNIG00000009153
I
0.756
Q8QGJ7_FUGRU
Takifugu rubripes
ENSTRUG00000005907
I
0.753
PABPC3
Oryzias latipes
ENSORLG00000002691
I
0.753
pabpc1a
Danio rerio
ENSDARG00000017219
I
0.753
PABPC4
Tetraodon nigroviridis
ENSTNIG00000016902
I
0.749
ENSMICG00000016633
Microcebus murinus
ENSMICG00000016633
I
0.749
LOC100411130
Callithrix jacchus
ENSCJAG00000018953
I
0.746
pabpc1b
Danio rerio
ENSDARG00000021140
I
0.743
XP_001177907.1
Strongylocentrotus purpuratus
XP_001177907.1
I
0.741
XP_801795.2
Strongylocentrotus purpuratus
XP_801795.2
I
0.741
gw.1.65.1
Branchiostoma floridae
gw.1.65.1
I
0.740
e_gw.313.40.1
Branchiostoma floridae
e_gw.313.40.1
I
0.740
ENSTSYG00000004229
Tarsius syrichta
ENSTSYG00000004229
I
0.739
XM_001367383.1
Monodelphis domestica
ENSMODG00000017105
I
0.739
e_gw1.115.135.1
Lottia gigantea
e_gw1.115.135.1
I
0.733
185682
Helobdella robusta
185682
I
0.733
Ame_R001741
Ailuropoda melanoleuca
Ame_R001741
I
0.731
ENSORLG00000003008
Oryzias latipes
ENSORLG00000003008
I
0.728
Pabpc2
Mus musculus
ENSMUSG00000051732
I
0.728
fgenesh1_pm.scaffold_278000002
Nematostella vectensis
fgenesh1_pm.scaffold_278000002
I
0.727
PABPC3
Tetraodon nigroviridis
ENSTNIG00000013307
I
0.727
ENSPPYG00000005219
Pongo pygmaeus
ENSPPYG00000005219
I
0.724
Pabpc2
Rattus norvegicus
ENSRNOG00000014527
I
0.724
PABPC3
Macaca mulatta
ENSMMUG00000020835
I
0.721
ENSCING00000002796
Ciona intestinalis
ENSCING00000002796
I
0.719
estExt_Genewise1.C_sca_1150143
Lottia gigantea
estExt_Genewise1.C_sca_1150143
I
0.719
PABPC1L
Gasterosteus aculeatus
ENSGACG00000002792
I
0.717
PABPC1L
Gallus gallus
ENSGALG00000004123
I
0.717
Q2VIP2_PANTR
Pan troglodytes
ENSPTRG00000022593
I
0.717
PABPC1L
Meleagris gallopavo
ENSMGAG00000003674
I
0.717
XP_002156940.1
Hydra magnipapillata
XP_002156940.1
I
0.716
XP_002156904.1
Hydra magnipapillata
XP_002156904.1
I
0.716
pabpc4
Xenopus tropicalis
ENSXETG00000010946
I
0.714
Q98SP8
Xenopus laevis
Q98SP8
I
0.714
AAK29408
Xenopus laevis
AAK29408
I
0.714
Ame_R019277
Ailuropoda melanoleuca
Ame_R019277
I
0.714
AAH80020
Xenopus laevis
AAH80020
I
0.714
PABPC3
Homo sapiens
ENSG00000151846
D
0.714
ENSACAG00000002544
Anolis carolinensis
ENSACAG00000002544
I
0.710
PABPC1L
Macropus eugenii
ENSMEUG00000007905
I
0.710
PABPC1L
Takifugu rubripes
ENSTRUG00000011085
I
0.710
PABPC1L
Anolis carolinensis
ENSACAG00000011841
I
0.710
Bm1_16080
Brugia malayi
Bm1_16080
I
0.709
Bm1_06880
Brugia malayi
Bm1_06880
I
0.709
LOAG_01058
Loa loa
LOAG_01058
I
0.709
PABPC1L
Monodelphis domestica
ENSMODG00000016198
I
0.707
PABPC1L
Sus scrofa
ENSSSCG00000007382
I
0.707
PABPC1L
Taeniopygia guttata
ENSTGUG00000005114
I
0.707
CBG02207
Caenorhabditis briggsae
CBG02207
N
0.706
e_gw1.7.538.1
Trichoplax adhaerens
e_gw1.7.538.1
I
0.706
CBN04295
Caenorhabditis brenneri
CBN04295
I
0.706
ENSCSAVG00000004246
Ciona savignyi
ENSCSAVG00000004246
I
0.705
Pabpc6
Mus musculus
ENSMUSG00000046173
I
0.703
pabpc1l
Xenopus tropicalis
ENSXETG00000022831
I
0.703
AAH71118
Xenopus laevis
AAH71118
I
0.703
Pabpc3
Rattus norvegicus
ENSRNOG00000017367
I
0.703
Q6GR16
Xenopus laevis
Q6GR16
I
0.703
69344
Helobdella robusta
69344
I
0.701