PHUM617090 (Pediculus humanus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PHUM617090 T45404_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.770
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.768
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.750
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.750
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.750
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PHUM617090-PA RRM 13 83
PHUM617090-PA RRM 101 170
PHUM617090-PA RRM 194 264
PHUM617090-PA RRM 298 366

Links

Other RRM family RBPs
Other Pediculus humanus RBPs

146 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.875
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.875
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.875
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.875
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.865
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.865
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.865
AAEL010318 Aedes aegypti AAEL010318 I 0.836
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.829
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.829
AGAP011092 Anopheles gambiae AGAP011092 I 0.826
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.808
GI18654 Drosophila mojavensis FBgn0141393 I 0.794
GF12652 Drosophila ananassae FBgn0089688 I 0.791
GH21052 Drosophila grimshawi FBgn0128514 I 0.787
ISCW014211 Ixodes scapularis ISCW014211 I 0.787
GJ21671 Drosophila virilis FBgn0208790 I 0.787
GK19652 Drosophila willistoni FBgn0221650 I 0.784
GD11341 Drosophila simulans FBgn0183090 I 0.784
GG21846 Drosophila erecta FBgn0114024 I 0.784
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.781
GE11925 Drosophila yakuba FBgn0229707 I 0.780
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.780
pAbp Drosophila melanogaster FBgn0261619 D 0.780
GM21847 Drosophila sechellia FBgn0176724 I 0.780
GL11548 Drosophila persimilis FBgn0149157 I 0.780
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.777
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.776
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.774
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.774
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.774
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.774
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.774
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.774
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.774
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.774
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.774
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.774
PABPC4 Homo sapiens ENSG00000090621 D 0.774
Gm10110 Mus musculus ENSMUSG00000062093 I 0.774
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.774
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.774
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.774
LOC100054235 Equus caballus ENSECAG00000009396 I 0.774
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.772
P20965 Xenopus laevis P20965 I 0.770
AAH73435 Xenopus laevis AAH73435 I 0.770
AAH52100 Xenopus laevis AAH52100 I 0.770
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.770
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.770
CAA40721 Xenopus laevis CAA40721 I 0.770
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.770
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.770
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.767
PABPC4 Gallus gallus ENSGALG00000003800 I 0.767
Q6IP09 Xenopus laevis Q6IP09 I 0.767
AAI08463 Xenopus laevis AAI08463 I 0.767
AAA60936 Xenopus laevis AAA60936 I 0.767
AAH72110 Xenopus laevis AAH72110 I 0.767
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.765
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.764
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.763
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.763
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.763
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.763
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.763
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.763
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.760
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.760
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.760
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.760
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.760
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.760
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.760
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.760
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.760
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.760
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.760
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.760
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.760
PABPC1 Homo sapiens ENSG00000070756 D 0.760
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.760
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.760
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.756
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.756
pabpc4 Danio rerio ENSDARG00000059259 I 0.756
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.756
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.756
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.756
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.753
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.753
pabpc1a Danio rerio ENSDARG00000017219 I 0.753
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.749
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.749
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.746
pabpc1b Danio rerio ENSDARG00000021140 I 0.743
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.741
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.741
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.740
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.740
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.739
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.739
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.733
185682 Helobdella robusta 185682 I 0.733
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.731
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.728
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.728
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.727
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.727
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.724
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.724
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.721
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.719
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.719
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.717
PABPC1L Gallus gallus ENSGALG00000004123 I 0.717
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.717
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.717
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.716
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.716
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.714
Q98SP8 Xenopus laevis Q98SP8 I 0.714
AAK29408 Xenopus laevis AAK29408 I 0.714
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.714
AAH80020 Xenopus laevis AAH80020 I 0.714
PABPC3 Homo sapiens ENSG00000151846 D 0.714
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.710
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.710
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.710
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.710
Bm1_16080 Brugia malayi Bm1_16080 I 0.709
Bm1_06880 Brugia malayi Bm1_06880 I 0.709
LOAG_01058 Loa loa LOAG_01058 I 0.709
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.707
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.707
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.707
CBG02207 Caenorhabditis briggsae CBG02207 N 0.706
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.706
CBN04295 Caenorhabditis brenneri CBN04295 I 0.706
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.705
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.703
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.703
AAH71118 Xenopus laevis AAH71118 I 0.703
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.703
Q6GR16 Xenopus laevis Q6GR16 I 0.703
69344 Helobdella robusta 69344 I 0.701