srsf5a (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000029818 T36116_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.721
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000043311 RRM 6 68
ENSDARP00000043311 RRM 115 180

Links

Other RRM family RBPs
Other Danio rerio RBPs

107 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.922
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.915
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.907
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.860
AAH71160 Xenopus laevis AAH71160 I 0.860
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.853
AAH44085 Xenopus laevis AAH44085 I 0.853
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.837
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.822
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.822
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.806
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.806
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.806
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.806
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.798
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.798
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.798
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.798
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.798
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.798
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.798
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.798
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.798
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.798
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.798
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.798
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.798
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.798
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.798
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.798
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.798
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.798
LOC100053264 Equus caballus ENSECAG00000026873 I 0.798
Srsf5 Mus musculus ENSMUSG00000021134 I 0.798
SRSF5 Felis catus ENSFCAG00000008848 I 0.798
SRSF5 Homo sapiens ENSG00000100650 D 0.798
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.791
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.791
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.791
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.791
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.791
srsf5b Danio rerio ENSDARG00000027734 I 0.783
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.783
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.783
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.775
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.767
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.767
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.752
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.752
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.752
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.752
SRSF4 Homo sapiens ENSG00000116350 I 0.752
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.752
Srsf4 Mus musculus ENSMUSG00000028911 I 0.752
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.752
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.752
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.752
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.752
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.752
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.752
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.752
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.752
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.752
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.752
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.752
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.752
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.752
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.744
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.744
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.736
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.736
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.736
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.736
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.729
ISCW014220 Ixodes scapularis ISCW014220 I 0.729
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.721
GF17608 Drosophila ananassae FBgn0094626 I 0.721
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.721
SRSF5 Sorex araneus ENSSARG00000001059 I 0.721
B52 Drosophila melanogaster FBgn0004587 D 0.721
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.721
GH18528 Drosophila grimshawi FBgn0125995 I 0.721
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.721
GL23543 Drosophila persimilis FBgn0161133 I 0.721
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.721
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.721
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.721
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.721
GJ24113 Drosophila virilis FBgn0211197 I 0.721
GK13948 Drosophila willistoni FBgn0215954 I 0.721
GI22065 Drosophila mojavensis FBgn0144794 I 0.721
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.713
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.713
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.713
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.713
ISCW010322 Ixodes scapularis ISCW010322 I 0.705
srsf6a Danio rerio ENSDARG00000013729 I 0.705
Aqu1.218342 Amphimedon queenslandica Aqu1.218342 N 0.705
srsf6b Danio rerio ENSDARG00000016783 I 0.705
ISCW010321 Ixodes scapularis ISCW010321 I 0.705
PHUM290500 Pediculus humanus PHUM290500 I 0.705
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.705
AGAP004592 Anopheles gambiae AGAP004592 I 0.705
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.705
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.705