srsf5b (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000027734 T36114_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.705
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000011196 RRM 6 68
ENSDARP00000011196 RRM 112 177
ENSDARP00000069997 RRM 6 68

Links

Other RRM family RBPs
Other Danio rerio RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.953
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.953
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.953
SRSF5 Gasterosteus aculeatus ENSGACG00000007834 I 0.952
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.938
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.938
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.938
AAH70967 Xenopus laevis AAH70967 N 0.937
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.930
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.930
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.930
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.930
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.930
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.930
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.930
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.930
Srsf5 Mus musculus ENSMUSG00000021134 I 0.930
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.930
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.930
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.930
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.930
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.930
SRSF5 Felis catus ENSFCAG00000008848 I 0.930
LOC100053264 Equus caballus ENSECAG00000026873 I 0.930
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.930
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.930
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.930
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.930
SRSF5 Homo sapiens ENSG00000100650 D 0.930
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.930
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.922
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.922
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.922
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.907
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.899
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.837
SRSF5 Sorex araneus ENSSARG00000001059 I 0.814
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.814
SRSF5 Pteropus vampyrus ENSPVAG00000009828 I 0.806
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.798
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.798
AAH71160 Xenopus laevis AAH71160 I 0.798
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.798
srsf5a Danio rerio ENSDARG00000029818 I 0.783
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.783
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.783
AAH44085 Xenopus laevis AAH44085 I 0.775
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.752
Srsf5 Dipodomys ordii ENSDORG00000003989 I 0.752
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.744
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.736
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.736
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.736
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.736
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.736
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.736
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.736
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.736
SRSF4 Homo sapiens ENSG00000116350 I 0.736
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.736
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.736
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.736
Srsf4 Mus musculus ENSMUSG00000028911 I 0.736
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.736
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.736
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.736
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.736
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.736
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.736
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.736
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.736
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.736
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.736
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.736
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.736
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.736
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.729
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.729
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.729
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.729
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.721
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.721
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.721
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.713
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.713
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.713
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.713
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.713
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.713
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.713
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.713
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.713
SRSF6 Homo sapiens ENSG00000124193 I 0.713
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.713
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.713
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.713
Srsf6 Mus musculus ENSMUSG00000016921 I 0.713
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.713
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.713
GF17608 Drosophila ananassae FBgn0094626 I 0.705
GK13948 Drosophila willistoni FBgn0215954 I 0.705
PHUM290500 Pediculus humanus PHUM290500 I 0.705
srsf6b Danio rerio ENSDARG00000016783 I 0.705
srsf6a Danio rerio ENSDARG00000013729 I 0.705
B52 Drosophila melanogaster FBgn0004587 D 0.705
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.705
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.705
Aqu1.218342 Amphimedon queenslandica Aqu1.218342 N 0.705
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.705
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.705
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.705