Cucsa.364050 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.364050 T49653_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.364050.1 RRM 37 107
Cucsa.364050.1 RRM 125 194
Cucsa.364050.1 RRM 215 283
Cucsa.364050.1 RRM 319 388

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00013699001 Vitis vinifera GSVIVG00013699001 N 0.776
B9H7X9_POPTR Populus trichocarpa POPTR_0005s22040 N 0.769
Glyma20g31120.1 Glycine max Glyma20g31120.1 N 0.765
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.762
28644.m000904 Ricinus communis 28644.m000904 N 0.757
ppa002584m Prunus persica ppa002584m N 0.751
B9GT62_POPTR Populus trichocarpa POPTR_0002s06340 N 0.730
MDP0000212007 Malus x domestica MDP0000212007 N 0.730
Glyma16g27670.1 Glycine max Glyma16g27670.1 N 0.730
MDP0000286821 Malus x domestica MDP0000286821 N 0.722
Glyma02g08480.1 Glycine max Glyma02g08480.1 N 0.712
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.708
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.708
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.705
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.701