cassava31766.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava31766.valid.m1 T49305_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava31766.valid.m1 RRM 41 111
cassava31766.valid.m1 RRM 129 198
cassava31766.valid.m1 RRM 220 289
cassava31766.valid.m1 RRM 324 393

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma20g31120.1 Glycine max Glyma20g31120.1 N 0.836
B9H7X9_POPTR Populus trichocarpa POPTR_0005s22040 N 0.829
28644.m000904 Ricinus communis 28644.m000904 N 0.829
GSVIVG00013699001 Vitis vinifera GSVIVG00013699001 N 0.808
B9GT62_POPTR Populus trichocarpa POPTR_0002s06340 N 0.804
Glyma16g27670.1 Glycine max Glyma16g27670.1 N 0.765
Cucsa.364050 Cucumis sativus Cucsa.364050 N 0.762
MDP0000212007 Malus x domestica MDP0000212007 N 0.762
ppa002584m Prunus persica ppa002584m N 0.758
MDP0000286821 Malus x domestica MDP0000286821 N 0.758
Glyma02g08480.1 Glycine max Glyma02g08480.1 N 0.754
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.726
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.722
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.715
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.715
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.715
29801.m003152 Ricinus communis 29801.m003152 N 0.712
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.712
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.712
30170.m013847 Ricinus communis 30170.m013847 N 0.708
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.708
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.705
mgf009542m Mimulus guttatus mgf009542m N 0.705
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.705
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.705
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.705
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.702
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.702
ppa002607m Prunus persica ppa002607m N 0.701
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.701
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.701