B9H7X9_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0005s22040 T45522_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s22040.1 RRM 35 105
POPTR_0005s22040.1 RRM 123 192
POPTR_0005s22040.1 RRM 214 283
POPTR_0005s22040.1 RRM 317 386

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GT62_POPTR Populus trichocarpa POPTR_0002s06340 N 0.890
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.829
GSVIVG00013699001 Vitis vinifera GSVIVG00013699001 N 0.808
Glyma20g31120.1 Glycine max Glyma20g31120.1 N 0.801
28644.m000904 Ricinus communis 28644.m000904 N 0.797
Cucsa.364050 Cucumis sativus Cucsa.364050 N 0.769
Glyma16g27670.1 Glycine max Glyma16g27670.1 N 0.751
ppa002584m Prunus persica ppa002584m N 0.740
Glyma02g08480.1 Glycine max Glyma02g08480.1 N 0.737
MDP0000212007 Malus x domestica MDP0000212007 N 0.733
MDP0000286821 Malus x domestica MDP0000286821 N 0.730
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.708
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.705
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.701
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.701
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.701
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.701
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.701
SB06G021850 Sorghum bicolor Sb06g021850 N 0.701
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.701
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.701