estExt_Genewise1.C_1260120 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_1260120 T51188_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_1260120 RRM 26 96
estExt_Genewise1.C_1260120 RRM 114 183
estExt_Genewise1.C_1260120 RRM 205 274
estExt_Genewise1.C_1260120 RRM 308 377

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.918
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.893
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.879
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.776
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.776
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.769
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.762
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.762
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.758
MDP0000253709 Malus x domestica MDP0000253709 N 0.758
mgf004973m Mimulus guttatus mgf004973m N 0.758
MDP0000156895 Malus x domestica MDP0000156895 N 0.758
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.754
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.754
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.754
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.754
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.754
MDP0000497543 Malus x domestica MDP0000497543 N 0.754
ppa002607m Prunus persica ppa002607m N 0.751
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.751
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.751
29801.m003152 Ricinus communis 29801.m003152 N 0.751
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.751
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.747
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.747
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.747
mgf009542m Mimulus guttatus mgf009542m N 0.747
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.740
PK02172.1 Cannabis sativa PK02172.1 N 0.740
30170.m013847 Ricinus communis 30170.m013847 N 0.737
ppa002620m Prunus persica ppa002620m N 0.737
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.737
ppa002618m Prunus persica ppa002618m N 0.737
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.737
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.737
MDP0000283985 Malus x domestica MDP0000283985 N 0.730
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.727
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.727
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.726
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.726
PK00659.1 Cannabis sativa PK00659.1 N 0.719
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.719
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.719
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.719
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.715
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.715
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.709
Cucsa.364050 Cucumis sativus Cucsa.364050 N 0.708
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.708
estExt_fgenesh1_pg.C_10300 Micromonas pusilla estExt_fgenesh1_pg.C_10300 N 0.706
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.705
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.705