CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GL18179
(
Drosophila persimilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0155782
T43722_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0182286
RRM
972
1036
LLLKNLTAQIDGPTLRTLCMQHGPLVSFHLYLNQGIALCKYTTREEASKAQMALNNCVLGNTTIF
Links
Other
RRM
family RBPs
Other
Drosophila persimilis
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA16600-RA
Drosophila pseudoobscura
FBgn0076615
N
1.000
GM26772
Drosophila sechellia
FBgn0181625
N
0.954
gw
Drosophila melanogaster
FBgn0051992
N
0.954
GD24374
Drosophila simulans
FBgn0195715
N
0.954
GG16439
Drosophila erecta
FBgn0108670
N
0.938
GE14506
Drosophila yakuba
FBgn0232110
N
0.938
GJ14351
Drosophila virilis
FBgn0201564
N
0.938
GK13697
Drosophila willistoni
FBgn0215705
N
0.938
GH23931
Drosophila grimshawi
FBgn0131388
N
0.938
GF19039
Drosophila ananassae
FBgn0096051
N
0.923
AGAP007802
Anopheles gambiae
AGAP007802
N
0.877
AAEL007436
Aedes aegypti
AAEL007436
N
0.846
CPIJ010645
Culex quinquefasciatus
CPIJ010645
N
0.831
AAEL801228
Aedes aegypti
AAEL007447
N
0.831
BGIBMGA005589
Bombyx mori
BGIBMGA005589
N
0.831
CpipJ_CPIJ010645
Culex pipiens
CpipJ_CPIJ010645
N
0.831
DGIL_AUG5s11561g1t1
Acyrtosiphon pisum
DGIL_AUG5s11561g1t1
N
0.815
AGAP007808
Anopheles gambiae
AGAP007808
N
0.800
amel4_ncbi_hmm5263
Apis mellifera
amel4_ncbi_hmm5263
N
0.785
CPIJ011735
Culex quinquefasciatus
CPIJ011735
N
0.769
CpipJ_CPIJ011735
Culex pipiens
CpipJ_CPIJ011735
N
0.769
PASA_GEN_0100279
Daphnia pulex
PASA_GEN_0100279
N
0.738
estExt_fgenesh2_pg.C_4930048
Branchiostoma floridae
estExt_fgenesh2_pg.C_4930048
N
0.708
estExt_fgenesh2_pg.C_5340004
Branchiostoma floridae
estExt_fgenesh2_pg.C_5340004
N
0.708
AAEL007449
Aedes aegypti
AAEL007449
N
0.708