CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GF19039
(
Drosophila ananassae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0096051
T43274_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0122231
RRM
1104
1168
LLLKNLTAQIDGSTLRTLCMQHGPLVSFHLYLSQGIALCKYATREEANKAQMALNNCVLANTTIF
Links
Other
RRM
family RBPs
Other
Drosophila ananassae
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GE14506
Drosophila yakuba
FBgn0232110
N
0.954
GM26772
Drosophila sechellia
FBgn0181625
N
0.938
gw
Drosophila melanogaster
FBgn0051992
N
0.938
GD24374
Drosophila simulans
FBgn0195715
N
0.938
GA16600-RA
Drosophila pseudoobscura
FBgn0076615
N
0.923
GK13697
Drosophila willistoni
FBgn0215705
N
0.923
GJ14351
Drosophila virilis
FBgn0201564
N
0.923
GG16439
Drosophila erecta
FBgn0108670
N
0.923
GH23931
Drosophila grimshawi
FBgn0131388
N
0.923
GL18179
Drosophila persimilis
FBgn0155782
N
0.923
AGAP007802
Anopheles gambiae
AGAP007802
N
0.877
CPIJ010645
Culex quinquefasciatus
CPIJ010645
N
0.831
CpipJ_CPIJ010645
Culex pipiens
CpipJ_CPIJ010645
N
0.831
BGIBMGA005589
Bombyx mori
BGIBMGA005589
N
0.831
AAEL007436
Aedes aegypti
AAEL007436
N
0.815
AAEL801228
Aedes aegypti
AAEL007447
N
0.800
DGIL_AUG5s11561g1t1
Acyrtosiphon pisum
DGIL_AUG5s11561g1t1
N
0.785
AGAP007808
Anopheles gambiae
AGAP007808
N
0.785
amel4_ncbi_hmm5263
Apis mellifera
amel4_ncbi_hmm5263
N
0.769
estExt_fgenesh2_pg.C_5340004
Branchiostoma floridae
estExt_fgenesh2_pg.C_5340004
N
0.723
CPIJ011735
Culex quinquefasciatus
CPIJ011735
N
0.723
CpipJ_CPIJ011735
Culex pipiens
CpipJ_CPIJ011735
N
0.723
estExt_fgenesh2_pg.C_4930048
Branchiostoma floridae
estExt_fgenesh2_pg.C_4930048
N
0.723
PASA_GEN_0100279
Daphnia pulex
PASA_GEN_0100279
N
0.723
AGAP007803
Anopheles gambiae
AGAP007803
N
0.708