fgenesh1_pg.C_scaffold_1000567 (Sporobolomyces roseus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pg.C_scaffold_1000567 T51785_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_1000567 RRM 197 267

Links

Other RRM family RBPs
Other Sporobolomyces roseus RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_4000265 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_4000265 N 0.817
AMAG_03225 Allomyces macrogynus AMAG_03225 N 0.761
CC1G_06273 Coprinopsis cinerea CC1G_06273 N 0.761
GSTUMT00006382001 Tuber melanosporum GSTUMT00006382001 N 0.761
e_gw1.87.91.1 Postia placenta e_gw1.87.91.1 N 0.761
estExt_Genewise1Plus.C_200094 Postia placenta estExt_Genewise1Plus.C_200094 N 0.761
YALI0F14245g Yarrowia lipolytica YALI0F14245g N 0.746
e_gw1.1.503.1 Phycomyces blakesleeanus e_gw1.1.503.1 N 0.746
RO3G_08088 Rhizopus oryzae RO3G_08088 N 0.732
augustus-scaffold_1.g441 Schizophyllum commune augustus-scaffold_1.g441 N 0.732
genemark.9207_g Pleurotus ostreatus genemark.9207_g N 0.732
gw1.11.214.1 Batrachochytrium dendrobatidis gw1.11.214.1 N 0.718
fgeneshTM_pg.1_#_1063 Tremella mesenterica fgeneshTM_pg.1_#_1063 N 0.718
SPPG_07834 Spizellomyces punctatus SPPG_07834 N 0.718
ACLA_045660 Aspergillus clavatus CADACLAG00004652 N 0.718
PABG_04180 Paracoccidioides brasiliensis PABG_04180 N 0.718
estExt_fgenesh1_pg.C_90140 Trichoderma atroviride estExt_fgenesh1_pg.C_90140 N 0.718
e_gw1.1.997.1 Trichoderma reesei e_gw1.1.997.1 N 0.718
e_gw1.17.425.1 Trichoderma virens e_gw1.17.425.1 N 0.718
AFLA_113610 Aspergillus flavus CADAFLAG00005095 N 0.718
AO090023000955 Aspergillus oryzae CADAORAG00008034 N 0.718
e_gw1.10.335.1 Mucor circinelloides e_gw1.10.335.1 N 0.704
estExt_Genewise1Plus.C_61440 Thielavia terrestris estExt_Genewise1Plus.C_61440 N 0.704
NFIA_109800 Neosartorya fischeri CADNFIAG00009499 N 0.704
PTRG_04434 Pyrenophora tritici repentis PTRG_04434 N 0.704
DEHA0A05764g Debaryomyces hansenii DEHA0A05764g N 0.704
PMAA_027560 Penicillium marneffei PMAA_027560 N 0.704
fgenesh1_pm.00609_#_590 Aspergillus carbonarius fgenesh1_pm.00609_#_590 N 0.704
estExt_fgenesh2_kg.C_71062 Serpula lacrymans estExt_fgenesh2_kg.C_71062 N 0.704
FGSG_04392 Fusarium graminearum FGSG_04392 N 0.704
FOXG_13842 Fusarium oxysporum FOXG_13842 N 0.704
An04g00680 Aspergillus niger CADANGAG00003776 N 0.704
MGYG_01823 Microsporum gypseum MGYG_01823 N 0.704
FVEG_11271 Fusarium verticillioides FVEG_11271 N 0.704
ATEG_05588 Aspergillus terreus CADATEAG00005000 N 0.704