fgenesh1_pg.C_scaffold_6000249 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pg.C_scaffold_6000249 T51919_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_6000249 RRM 109 176
fgenesh1_pg.C_scaffold_6000249 RRM 195 256

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PHUM575260 Pediculus humanus PHUM575260 I 0.808
nasonia_NCBI_hmm274594 Nasonia vitripennis nasonia_NCBI_hmm274594 I 0.795
amel4_ncbi_hmm11035 Apis mellifera amel4_ncbi_hmm11035 I 0.788
GF12452 Drosophila ananassae FBgn0089489 I 0.750
BGIBMGA006832 Bombyx mori BGIBMGA006832 N 0.748
GG19989 Drosophila erecta FBgn0112189 I 0.742
GK15864 Drosophila willistoni FBgn0217867 I 0.742
GE11522 Drosophila yakuba FBgn0229324 I 0.742
GD25005 Drosophila simulans FBgn0196318 I 0.735
GM15502 Drosophila sechellia FBgn0170420 I 0.735
GL10927 Drosophila persimilis FBgn0148537 I 0.735
GA10247-RA Drosophila pseudoobscura FBgn0070305 I 0.735
TBPH Drosophila melanogaster FBgn0025790 I 0.735
GJ21868 Drosophila virilis FBgn0208985 I 0.727
estExt_fgenesh2_pg.C_sca_880075 Lottia gigantea estExt_fgenesh2_pg.C_sca_880075 N 0.723
GI20724 Drosophila mojavensis FBgn0143459 I 0.720
GH20198 Drosophila grimshawi FBgn0127662 I 0.720
estExt_Genewise1Plus.C_8190002 Capitella teleta estExt_Genewise1Plus.C_8190002 I 0.715
CpipJ_CPIJ014288 Culex pipiens CpipJ_CPIJ014288 N 0.708
CPIJ014288 Culex quinquefasciatus CPIJ014288 N 0.708
BGIBMGA007518 Bombyx mori BGIBMGA007518 N 0.708
170286 Helobdella robusta 170286 I 0.700
e_gw.96.287.1 Branchiostoma floridae e_gw.96.287.1 I 0.700