e_gw.96.287.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.96.287.1 T50265_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TARDBP
M074_0.6 		Homo sapiens GAAUGD RNAcompete
Ray et al.(2013)
RNCMPT00076 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.96.287.1 RRM 105 172
e_gw.96.287.1 RRM 192 246

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.96.41.1 Branchiostoma floridae e_gw.96.41.1 N 0.853
PHUM575260 Pediculus humanus PHUM575260 I 0.786
estExt_Genewise1Plus.C_8190002 Capitella teleta estExt_Genewise1Plus.C_8190002 I 0.748
LOC100014246 Monodelphis domestica ENSMODG00000011233 I 0.736
TARDBP Erinaceus europaeus ENSEEUG00000003755 I 0.736
TARDBP Ornithorhynchus anatinus ENSOANG00000013320 I 0.736
TARDBP Loxodonta africana ENSLAFG00000014421 I 0.736
TARDBP Tursiops truncatus ENSTTRG00000001312 I 0.736
tardbp Xenopus tropicalis ENSXETG00000006317 I 0.736
TARDBP Vicugna pacos ENSVPAG00000009543 I 0.736
LOC100051482 Equus caballus ENSECAG00000008338 I 0.736
TARDBP Tupaia belangeri ENSTBEG00000000263 I 0.736
TARDBP Macropus eugenii ENSMEUG00000006548 I 0.736
ENSCAFG00000016759 Canis familiaris ENSCAFG00000016759 I 0.736
Ame_R011012 Ailuropoda melanoleuca Ame_R011012 I 0.736
TARDBP Takifugu rubripes ENSTRUG00000012070 I 0.734
nasonia_NCBI_hmm274594 Nasonia vitripennis nasonia_NCBI_hmm274594 I 0.728
Q2KJ45_BOVIN Bos taurus ENSBTAG00000003697 I 0.728
Tardbp Mus musculus ENSMUSG00000041459 I 0.728
TARDBP Ochotona princeps ENSOPRG00000006352 I 0.728
Tardbp Rattus norvegicus ENSRNOG00000012455 I 0.728
BGIBMGA006832 Bombyx mori BGIBMGA006832 N 0.728
TARDBP Taeniopygia guttata ENSTGUG00000003255 I 0.728
TARDBP Procavia capensis ENSPCAG00000010442 I 0.728
ENSOCUG00000004049 Oryctolagus cuniculus ENSOCUG00000004049 I 0.728
TARDBP Cavia porcellus ENSCPOG00000011619 I 0.728
TARDBP Felis catus ENSFCAG00000000050 I 0.728
TARDBP Dasypus novemcinctus ENSDNOG00000008531 I 0.728
TARDBP Echinops telfairi ENSETEG00000004358 I 0.728
TARDBP Tetraodon nigroviridis ENSTNIG00000015173 I 0.726
TADBP_CHICK Gallus gallus ENSGALG00000002906 I 0.720
ENSPPYG00000001894 Pongo pygmaeus ENSPPYG00000001894 I 0.720
AAM33247 Xenopus laevis AAM33247 I 0.720
LOC100405373 Callithrix jacchus ENSCJAG00000002381 I 0.720
TARDBP Tarsius syrichta ENSTSYG00000004077 I 0.720
amel4_ncbi_hmm11035 Apis mellifera amel4_ncbi_hmm11035 I 0.720
Tardbp Dipodomys ordii ENSDORG00000007465 I 0.720
XR_021519.1 Pan troglodytes ENSPTRG00000000136 I 0.720
ENSACAG00000011709 Anolis carolinensis ENSACAG00000011709 I 0.720
ENSMMUG00000007456 Macaca mulatta ENSMMUG00000007456 I 0.720
TARDBP Meleagris gallopavo ENSMGAG00000004637 I 0.720
TARDBP Homo sapiens ENSG00000120948 D 0.720
TARDBP Oryzias latipes ENSORLG00000005188 I 0.720
TARDBP Oryzias latipes ENSORLG00000003593 I 0.720
TARDBP Gasterosteus aculeatus ENSGACG00000012164 I 0.712
TARDBP Myotis lucifugus ENSMLUG00000004263 I 0.712
tardbpl Danio rerio ENSDARG00000004452 I 0.712
TARDBP Gasterosteus aculeatus ENSGACG00000007124 I 0.712
tardbp Danio rerio ENSDARG00000040031 I 0.711
e_gw1.17.468.1 Lottia gigantea e_gw1.17.468.1 I 0.706
GD25005 Drosophila simulans FBgn0196318 I 0.704
TBPH Drosophila melanogaster FBgn0025790 I 0.704
GM15502 Drosophila sechellia FBgn0170420 I 0.704
fgenesh1_pg.C_scaffold_6000249 Daphnia pulex fgenesh1_pg.C_scaffold_6000249 N 0.700