estExt_fgenesh1_kg.C_70028 (Melampsora laricis populina)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_kg.C_70028 T50434_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_kg.C_70028 RRM 15 85
estExt_fgenesh1_kg.C_70028 RRM 102 173

Links

Other RRM family RBPs
Other Melampsora laricis populina RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CC1G_10837 Coprinopsis cinerea CC1G_10837 N 0.839
e_gw1.2.1555.1 Heterobasidion annosum e_gw1.2.1555.1 N 0.839
estExt_Genewise1Plus.C_920074 Postia placenta estExt_Genewise1Plus.C_920074 I 0.839
e_gwh2.1.820.1 Phanerochaete chrysosporium e_gwh2.1.820.1 N 0.832
genemark.276_g Pleurotus ostreatus genemark.276_g N 0.832
estExt_fgenesh2_pm.C_20717 Agaricus bisporus estExt_fgenesh2_pm.C_20717 N 0.825
fgenesh2_kg.11_#_983_#_7076_1_CFOT Serpula lacrymans fgenesh2_kg.11_#_983_#_7076_1_CFOT N 0.825
estExt_GeneWisePlus_worm.C_60233 Laccaria bicolor estExt_GeneWisePlus_worm.C_60233 N 0.818
e_gw1.2.2306.1 Schizophyllum commune e_gw1.2.2306.1 I 0.811
PTTG_06570 Puccinia triticina PTTG_06570 N 0.776
e_gw1.6.467.1 Sporobolomyces roseus e_gw1.6.467.1 N 0.771
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.734
CNBG_4530 Cryptococcus neoformans CNBG_4530 N 0.734
PGTG_13217 Puccinia graminis PGTG_13217 N 0.727
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.720
estExt_Genewise1Plus.C_150062 Mycosphaerella fijiensis estExt_Genewise1Plus.C_150062 N 0.713
PredSwiss_ASS2010_2420.1 Pneumocystis carinii PredSwiss_ASS2010_2420.1 N 0.713
PredSwiss_CON266.4 Pneumocystis carinii PredSwiss_CON266.4 N 0.713
estExt_fgeneshTM_pm.C_30110 Tremella mesenterica estExt_fgeneshTM_pm.C_30110 N 0.706