CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R009605
(
Ailuropoda melanoleuca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Ame_R009605
T55569_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R009605
RRM
56
114
RNRDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSQLRERELS
Ame_R009605
RRM
124
194
LCVANLPPSFTQQQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY
Ame_R009605
RRM
213
283
LCVDHLPPGFSDVDALRRALSAVHAPTFCQLAYGQDGQLKGFAVLEYETAEMAEEAQQWADGLALGGSHLR
Links
Other
RRM
family RBPs
Other
Ailuropoda melanoleuca
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RAVER1
Canis familiaris
ENSCAFG00000017861
N
0.942
A4FUZ2_BOVIN
Bos taurus
ENSBTAG00000015721
N
0.932
RAVER1
Pteropus vampyrus
ENSPVAG00000003689
N
0.932
RAVER1
Sus scrofa
ENSSSCG00000013650
N
0.932
RAVER1
Tursiops truncatus
ENSTTRG00000009552
N
0.927
RAVER1
Loxodonta africana
ENSLAFG00000003664
N
0.922
RAVER1
Felis catus
ENSFCAG00000009435
N
0.922
Raver1
Dipodomys ordii
ENSDORG00000010106
N
0.922
RAVER1
Macaca mulatta
ENSMMUG00000014897
N
0.910
RAVER1
Cavia porcellus
ENSCPOG00000001008
N
0.908
Raver1
Rattus norvegicus
ENSRNOG00000020710
N
0.908
RAVER1
Spermophilus tridecemlineatus
ENSSTOG00000003241
N
0.898
RAVER1
Oryctolagus cuniculus
ENSOCUG00000020918
N
0.893
RAVER1
Pan troglodytes
ENSPTRG00000010466
N
0.893
RAVER1
Microcebus murinus
ENSMICG00000010326
N
0.893
RAVER1
Homo sapiens
ENSG00000161847
N
0.893
RAVER1
Equus caballus
ENSECAG00000024966
N
0.888
RAVER1
Gorilla gorilla
ENSGGOG00000006015
N
0.888
Raver1
Mus musculus
ENSMUSG00000010205
N
0.888
ENSPPYG00000010514
Pongo pygmaeus
ENSPPYG00000010514
N
0.883
RAVER1
Monodelphis domestica
ENSMODG00000005584
N
0.840
RAVER1
Myotis lucifugus
ENSMLUG00000012328
N
0.801
RAVER1
Macropus eugenii
ENSMEUG00000003281
N
0.796
RAVER1
Anolis carolinensis
ENSACAG00000008386
N
0.728