EFA85538.1 (Polysphondylium pallidum)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 EFA85538.1 T61379_0.6 NCBI (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.763
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
EFA85538.1 S1 13 88

Links

Other S1 family RBPs
Other Polysphondylium pallidum RBPs

203 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GID1.0050760 Dictyostelium purpureum GID1.0050760 I 0.868
eIF2s1 Dictyostelium discoideum DDB_G0271862 I 0.855
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.789
PITG_07885 Phytophthora infestans PITG_07885 I 0.789
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.789
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.789
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.789
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.789
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.789
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.776
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.776
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.776
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.776
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.776
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.776
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.776
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.776
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.776
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.776
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.763
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.763
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.763
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.763
EIF2S1 Homo sapiens ENSG00000134001 I 0.763
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.763
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.763
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.763
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.763
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.763
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.763
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.763
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.763
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.763
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.763
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.763
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.763
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.763
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.763
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.763
eif2s1 Danio rerio ENSDARG00000052178 I 0.763
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.763
eif2s1l Danio rerio ENSDARG00000005827 I 0.763
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.763
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.763
LOC100052709 Equus caballus ENSECAG00000018424 I 0.763
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.763
GJ19141 Drosophila virilis FBgn0206286 I 0.763
GK25248 Drosophila willistoni FBgn0227207 I 0.763
GD15749 Drosophila simulans FBgn0187410 I 0.763
GM13399 Drosophila sechellia FBgn0168330 I 0.763
GI21763 Drosophila mojavensis FBgn0144493 I 0.763
GL20268 Drosophila persimilis FBgn0157863 I 0.763
GE15968 Drosophila yakuba FBgn0233524 I 0.763
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.763
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.763
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.763
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.763
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.763
114622 Helobdella robusta 114622 I 0.763
GG19321 Drosophila erecta FBgn0111525 I 0.763
GF19374 Drosophila ananassae FBgn0096384 I 0.763
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.763
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.763
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.763
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.763
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.763
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.763
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.763
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.763
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.763
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.763
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.763
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.763
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.763
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.763
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.763
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.763
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.763
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.763
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.763
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.763
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.763
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.763
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.750
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.750
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.750
AAH46576 Xenopus laevis AAH46576 I 0.750
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.750
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.750
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.750
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.750
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.750
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.750
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.750
69770 Aureococcus anophagefferens 69770 I 0.750
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.750
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.750
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.750
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.750
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.750
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.750
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.750
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.750
72304 Aureococcus anophagefferens 72304 I 0.750
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.750
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.750
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.750
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.750
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.750
PHUM551010 Pediculus humanus PHUM551010 I 0.750
EIF2S1 Tarsius syrichta ENSTSYG00000014171 I 0.750
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.750
AGAP011190 Anopheles gambiae AGAP011190 I 0.750
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.750
MCYG_00123 Microsporum canis MCYG_00123 I 0.750
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.750
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.750
TERG_00559 Trichophyton rubrum TERG_00559 I 0.750
DGIL_AUG5s12507g4t1 Acyrtosiphon pisum DGIL_AUG5s12507g4t1 I 0.750
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.750
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.750
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.750
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.737
AGR320W Ashbya gossypii AGR320W I 0.737
SOCG_01617 Schizosaccharomyces octosporus SOCG_01617 I 0.737
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.737
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.737
ISCW017360 Ixodes scapularis ISCW017360 I 0.737
A7TIH9_VANPO Vanderwaltozyma polyspora A7TIH9_VANPO I 0.737
AB05699.1 Alternaria brassicicola AB05699.1 I 0.737
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.737
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.737
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.737
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.737
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.737
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.737
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.737
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.737
tif211 Schizosaccharomyces pombe SPAC3G9.09c I 0.737
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.737
SJAG_03629 Schizosaccharomyces japonicus SJAG_03629 I 0.737
NCU08277 Neurospora crassa NCU08277 I 0.737
SAKL0G14058g Lachancea kluyveri SAKL0G14058g I 0.737
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.737
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.737
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.737
Bm1_04900 Brugia malayi Bm1_04900 I 0.737
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.737
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.737
LOAG_09556 Loa loa LOAG_09556 I 0.737
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.737
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.737
CTRG_04191 Candida tropicalis CTRG_04191 I 0.737
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.737
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.737
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.737
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.737
XP_002492289.1 Pichia pastoris XP_002492289.1 I 0.737
SPOG_03916 Schizosaccharomyces cryophilus SPOG_03916 I 0.737
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.737
ZYRO0G12056g Zygosaccharomyces rouxii ZYRO0G12056g I 0.737
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.737
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.737
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.737
13294_YJR007W Saccharomyces bayanus 13294_YJR007W I 0.724
12331_YJR007W Saccharomyces paradoxus 12331_YJR007W I 0.724
Skud_Contig1955.10 Saccharomyces kudriavzevii Skud_Contig1955.10 I 0.724
12209_YJR007W Saccharomyces mikatae 12209_YJR007W I 0.724
estExt_fgenesh2_pg.C_150109 Monosiga brevicollis estExt_fgenesh2_pg.C_150109 I 0.724
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.724
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.724
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.724
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.724
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.724
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.724
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.724
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.724
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.724
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.724
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.724
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.724
AMAG_04113 Allomyces macrogynus AMAG_04113 I 0.724
estExt_fgenesh1_pg.C_210283 Phytophthora capsici estExt_fgenesh1_pg.C_210283 I 0.724
AAEL013675 Aedes aegypti AAEL013675 I 0.724
PGUG_00485 Candida guilliermondii PGUG_00485 I 0.724
EDP42051.1 Malassezia globosa EDP42051.1 I 0.724
Cd36_06510 Candida dubliniensis Cd36_06510 I 0.724
SUI2 Candida albicans orf19.6213 I 0.724
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.724
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.724
SUI2 Saccharomyces cerevisiae YJR007W I 0.724
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.724
SS1G_13048 Sclerotinia sclerotiorum SS1G_13048 I 0.722
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.711
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.711
UM01463 Ustilago maydis UM01463 I 0.711
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.711
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.711
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.711
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.711
CAGL0B03795g Candida glabrata CAGL0B03795g I 0.711
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.705
AFUA_3G13480 Aspergillus fumigatus CADAFUAG00005171 I 0.705