Skud_Contig1955.10 (Saccharomyces kudriavzevii)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 Skud_Contig1955.10 T61422_0.6 SGD (2003-Oct-3)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.855
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Skud_Contig1955.10 S1 13 88

Links

Other S1 family RBPs
Other Saccharomyces kudriavzevii RBPs

233 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SUI2 Saccharomyces cerevisiae YJR007W I 0.987
13294_YJR007W Saccharomyces bayanus 13294_YJR007W I 0.987
12331_YJR007W Saccharomyces paradoxus 12331_YJR007W I 0.987
12209_YJR007W Saccharomyces mikatae 12209_YJR007W I 0.987
ZYRO0G12056g Zygosaccharomyces rouxii ZYRO0G12056g I 0.961
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.961
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.961
A7TIH9_VANPO Vanderwaltozyma polyspora A7TIH9_VANPO I 0.961
CAGL0B03795g Candida glabrata CAGL0B03795g I 0.947
XP_002492289.1 Pichia pastoris XP_002492289.1 I 0.921
SAKL0G14058g Lachancea kluyveri SAKL0G14058g I 0.921
CTRG_04191 Candida tropicalis CTRG_04191 I 0.908
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.908
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.908
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.908
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.908
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.908
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.908
AGR320W Ashbya gossypii AGR320W I 0.908
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.895
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.895
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.895
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.895
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.895
PGUG_00485 Candida guilliermondii PGUG_00485 I 0.895
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.895
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.895
SUI2 Candida albicans orf19.6213 I 0.895
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.895
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.895
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.895
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.895
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.895
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.895
Cd36_06510 Candida dubliniensis Cd36_06510 I 0.895
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.895
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.882
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.882
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.882
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.882
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.882
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.882
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.882
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.882
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.882
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.882
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.882
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.882
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.882
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.882
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.882
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.882
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.882
NCU08277 Neurospora crassa NCU08277 I 0.882
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.882
AB05699.1 Alternaria brassicicola AB05699.1 I 0.882
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.868
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.868
MCYG_00123 Microsporum canis MCYG_00123 I 0.868
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.868
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.868
TERG_00559 Trichophyton rubrum TERG_00559 I 0.868
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.868
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.868
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.868
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.868
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.868
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.868
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.868
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.868
SS1G_13048 Sclerotinia sclerotiorum SS1G_13048 I 0.861
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.855
GE15968 Drosophila yakuba FBgn0233524 I 0.855
GK25248 Drosophila willistoni FBgn0227207 I 0.855
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.855
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.855
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.855
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.855
GJ19141 Drosophila virilis FBgn0206286 I 0.855
GD15749 Drosophila simulans FBgn0187410 I 0.855
GF19374 Drosophila ananassae FBgn0096384 I 0.855
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.855
GG19321 Drosophila erecta FBgn0111525 I 0.855
GI21763 Drosophila mojavensis FBgn0144493 I 0.855
GM13399 Drosophila sechellia FBgn0168330 I 0.855
GL20268 Drosophila persimilis FBgn0157863 I 0.855
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.855
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.855
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.855
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.855
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.855
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.855
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.842
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.842
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.842
PITG_07885 Phytophthora infestans PITG_07885 I 0.842
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.842
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.842
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.842
AFUA_3G13480 Aspergillus fumigatus CADAFUAG00005171 I 0.833
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.829
UM01463 Ustilago maydis UM01463 I 0.829
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.829
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.829
EDP42051.1 Malassezia globosa EDP42051.1 I 0.829
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.829
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.829
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.829
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.829
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.829
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.829
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.829
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.829
AGAP011190 Anopheles gambiae AGAP011190 I 0.829
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.816
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.816
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.816
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.816
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.816
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.816
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.816
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.816
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.816
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.816
69770 Aureococcus anophagefferens 69770 I 0.816
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.816
PHUM551010 Pediculus humanus PHUM551010 I 0.816
tif211 Schizosaccharomyces pombe SPAC3G9.09c I 0.816
ISCW017360 Ixodes scapularis ISCW017360 I 0.816
72304 Aureococcus anophagefferens 72304 I 0.816
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.816
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.816
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.816
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.816
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.816
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.816
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.816
eif2s1l Danio rerio ENSDARG00000005827 I 0.816
eif2s1 Danio rerio ENSDARG00000052178 I 0.816
DGIL_AUG5s12507g4t1 Acyrtosiphon pisum DGIL_AUG5s12507g4t1 I 0.816
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.816
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.816
SOCG_01617 Schizosaccharomyces octosporus SOCG_01617 I 0.816
SPOG_03916 Schizosaccharomyces cryophilus SPOG_03916 I 0.816
SJAG_03629 Schizosaccharomyces japonicus SJAG_03629 I 0.816
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.816
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.816
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.816
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.816
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.816
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.816
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.816
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.816
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.816
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.816
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.816
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.816
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.816
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.816
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.816
EIF2S1 Homo sapiens ENSG00000134001 I 0.816
LOC100052709 Equus caballus ENSECAG00000018424 I 0.816
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.803
Bm1_04900 Brugia malayi Bm1_04900 I 0.803
AMAG_04113 Allomyces macrogynus AMAG_04113 I 0.803
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.803
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.803
LOAG_09556 Loa loa LOAG_09556 I 0.803
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.803
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.803
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.803
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.803
AAEL013675 Aedes aegypti AAEL013675 I 0.803
RO3G_12494 Rhizopus oryzae RO3G_12494 I 0.789
PGTG_13830 Puccinia graminis PGTG_13830 N 0.789
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.789
AAH46576 Xenopus laevis AAH46576 I 0.789
estExt_fgenesh1_pg.C_210283 Phytophthora capsici estExt_fgenesh1_pg.C_210283 I 0.789
EIF2S1 Tarsius syrichta ENSTSYG00000014171 I 0.789
estExt_Genewise1.C_51162 Mucor circinelloides estExt_Genewise1.C_51162 I 0.789
RO3G_13185 Rhizopus oryzae RO3G_13185 I 0.789
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.789
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.789
AO090012000783 Aspergillus oryzae CADAORAG00006316 N 0.789
114622 Helobdella robusta 114622 I 0.789
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.776
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.776
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.776
estExt_Genewise1Plus.C_230113 Phycomyces blakesleeanus estExt_Genewise1Plus.C_230113 I 0.776
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.776
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.776
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.769
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.763
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.763
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.763
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.763
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.763
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.763
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.763
PTSG_05806 Salpingoeca rosetta PTSG_05806 I 0.763
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.763
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.763
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.763
e_gwEuk.2.353.1 Ostreococcus lucimarinus e_gwEuk.2.353.1 I 0.763
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.750
estExt_fgenesh2_pg.C_150109 Monosiga brevicollis estExt_fgenesh2_pg.C_150109 I 0.750
Minc01303 Meloidogyne incognita Minc01303 I 0.737
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.737
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.737
EFA85538.1 Polysphondylium pallidum EFA85538.1 I 0.724
GID1.0050760 Dictyostelium purpureum GID1.0050760 I 0.724
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.724
PPA05168 Pristionchus pacificus PPA05168 I 0.724
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.724
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.711
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.711
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.711
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.711
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.711
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.711
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.711
LOC_Os07g49220 Oryza sativa LOC_Os07g49220 I 0.711
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.711
eIF2s1 Dictyostelium discoideum DDB_G0271862 I 0.711
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.711
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.711
BGIOSIBCE026135 Oryza indica BGIOSIBCE026135 I 0.711
29607.m000238 Ricinus communis 29607.m000238 I 0.711
MDP0000663428 Malus x domestica MDP0000663428 I 0.711
ppa008120m Prunus persica ppa008120m I 0.711
PK10564.1 Cannabis sativa PK10564.1 I 0.711
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.711
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.711