SS1G_13048 (Sclerotinia sclerotiorum)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 SS1G_13048 T60033_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.797
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
SS1T_13048 S1 13 91

Links

Other S1 family RBPs
Other Sclerotinia sclerotiorum RBPs

230 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.962
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.962
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.962
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.962
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.962
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.962
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.962
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.962
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.962
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.962
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.949
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.949
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.949
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.949
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.949
NCU08277 Neurospora crassa NCU08277 I 0.949
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.949
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.949
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.949
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.949
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.949
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.949
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.949
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.949
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.949
TERG_00559 Trichophyton rubrum TERG_00559 I 0.937
MCYG_00123 Microsporum canis MCYG_00123 I 0.937
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.937
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.937
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.937
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.937
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.937
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.937
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.937
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.937
AB05699.1 Alternaria brassicicola AB05699.1 I 0.924
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.924
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.924
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.924
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.924
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.924
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.911
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.911
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.911
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.911
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.911
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.911
AFUA_3G13480 Aspergillus fumigatus CADAFUAG00005171 I 0.889
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.886
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.886
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.886
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.886
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.886
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.886
12331_YJR007W Saccharomyces paradoxus 12331_YJR007W I 0.873
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.873
SUI2 Saccharomyces cerevisiae YJR007W I 0.873
A7TIH9_VANPO Vanderwaltozyma polyspora A7TIH9_VANPO I 0.873
13294_YJR007W Saccharomyces bayanus 13294_YJR007W I 0.873
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.873
SAKL0G14058g Lachancea kluyveri SAKL0G14058g I 0.873
12209_YJR007W Saccharomyces mikatae 12209_YJR007W I 0.873
ZYRO0G12056g Zygosaccharomyces rouxii ZYRO0G12056g I 0.873
XP_002492289.1 Pichia pastoris XP_002492289.1 I 0.873
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.861
AGR320W Ashbya gossypii AGR320W I 0.861
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.861
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.861
Skud_Contig1955.10 Saccharomyces kudriavzevii Skud_Contig1955.10 I 0.861
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.861
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.861
CAGL0B03795g Candida glabrata CAGL0B03795g I 0.848
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.848
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.848
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.848
AO090012000783 Aspergillus oryzae CADAORAG00006316 N 0.848
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.848
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.848
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.848
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.848
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.848
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.848
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.848
CTRG_04191 Candida tropicalis CTRG_04191 I 0.848
Cd36_06510 Candida dubliniensis Cd36_06510 I 0.835
SUI2 Candida albicans orf19.6213 I 0.835
SOCG_01617 Schizosaccharomyces octosporus SOCG_01617 I 0.823
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.823
EDP42051.1 Malassezia globosa EDP42051.1 I 0.823
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.823
SJAG_03629 Schizosaccharomyces japonicus SJAG_03629 I 0.823
SPOG_03916 Schizosaccharomyces cryophilus SPOG_03916 I 0.823
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.823
UM01463 Ustilago maydis UM01463 I 0.823
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.823
tif211 Schizosaccharomyces pombe SPAC3G9.09c I 0.823
PITG_07885 Phytophthora infestans PITG_07885 I 0.823
PGUG_00485 Candida guilliermondii PGUG_00485 I 0.823
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.810
72304 Aureococcus anophagefferens 72304 I 0.810
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.810
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.810
69770 Aureococcus anophagefferens 69770 I 0.810
ISCW017360 Ixodes scapularis ISCW017360 I 0.810
GM13399 Drosophila sechellia FBgn0168330 I 0.797
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.797
GF19374 Drosophila ananassae FBgn0096384 I 0.797
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.797
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.797
PGTG_13830 Puccinia graminis PGTG_13830 N 0.797
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.797
GG19321 Drosophila erecta FBgn0111525 I 0.797
GI21763 Drosophila mojavensis FBgn0144493 I 0.797
GE15968 Drosophila yakuba FBgn0233524 I 0.797
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.797
GK25248 Drosophila willistoni FBgn0227207 I 0.797
GJ19141 Drosophila virilis FBgn0206286 I 0.797
GL20268 Drosophila persimilis FBgn0157863 I 0.797
GD15749 Drosophila simulans FBgn0187410 I 0.797
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.797
DGIL_AUG5s12507g4t1 Acyrtosiphon pisum DGIL_AUG5s12507g4t1 I 0.785
AMAG_04113 Allomyces macrogynus AMAG_04113 I 0.785
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.785
RO3G_12494 Rhizopus oryzae RO3G_12494 I 0.785
RO3G_13185 Rhizopus oryzae RO3G_13185 I 0.785
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.785
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.785
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.785
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.785
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.785
AAH46576 Xenopus laevis AAH46576 I 0.785
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.785
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.785
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.785
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.785
EIF2S1 Homo sapiens ENSG00000134001 I 0.785
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.785
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.785
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.785
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.785
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.785
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.785
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.785
eif2s1l Danio rerio ENSDARG00000005827 I 0.785
eif2s1 Danio rerio ENSDARG00000052178 I 0.785
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.785
LOC100052709 Equus caballus ENSECAG00000018424 I 0.785
PHUM551010 Pediculus humanus PHUM551010 I 0.785
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.785
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.785
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.785
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.785
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.785
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.785
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.785
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.785
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.785
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.785
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.785
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.785
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.785
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.785
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.785
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.785
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.785
114622 Helobdella robusta 114622 I 0.785
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.785
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.785
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.785
estExt_Genewise1.C_51162 Mucor circinelloides estExt_Genewise1.C_51162 I 0.785
estExt_fgenesh2_pg.C_150109 Monosiga brevicollis estExt_fgenesh2_pg.C_150109 I 0.785
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.785
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.785
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.785
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.785
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.772
AGAP011190 Anopheles gambiae AGAP011190 I 0.772
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.772
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.772
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.772
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.772
Bm1_04900 Brugia malayi Bm1_04900 I 0.772
estExt_Genewise1Plus.C_230113 Phycomyces blakesleeanus estExt_Genewise1Plus.C_230113 I 0.772
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.772
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.772
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.772
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.772
LOAG_09556 Loa loa LOAG_09556 I 0.772
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.772
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.772
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.759
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.759
estExt_fgenesh1_pg.C_210283 Phytophthora capsici estExt_fgenesh1_pg.C_210283 I 0.759
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.759
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.759
e_gwEuk.2.353.1 Ostreococcus lucimarinus e_gwEuk.2.353.1 I 0.759
EIF2S1 Tarsius syrichta ENSTSYG00000014171 I 0.759
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.759
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.759
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.759
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.747
AAEL013675 Aedes aegypti AAEL013675 I 0.747
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.747
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.747
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.741
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.734
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.734
29607.m000238 Ricinus communis 29607.m000238 I 0.734
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.734
PK10564.1 Cannabis sativa PK10564.1 I 0.734
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.734
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.734
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.734
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.734
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.734
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.734
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.734
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.734
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.734
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.734
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.734
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.734
ppa008120m Prunus persica ppa008120m I 0.734
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.734
MDP0000663428 Malus x domestica MDP0000663428 I 0.734
mgf006782m Mimulus guttatus mgf006782m I 0.722
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.722
EFA85538.1 Polysphondylium pallidum EFA85538.1 I 0.722
PTSG_05806 Salpingoeca rosetta PTSG_05806 I 0.722
MDP0000155133 Malus x domestica MDP0000155133 I 0.709